Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M11
         (297 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524...    27   3.5  
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920...    26   6.0  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    25   8.0  
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    25   8.0  

>01_05_0669 -
           24152057-24152110,24152224-24152308,24152401-24152486,
           24153129-24154341,24154441-24154529,24154607-24154639,
           24154674-24154859,24155290-24155380,24155588-24155622,
           24155736-24155817,24155968-24156020,24156404-24156469,
           24156752-24156820,24156821-24156984,24157925-24158432,
           24158543-24158602
          Length = 957

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 201 FFITHNYSLRNINWTIIIFFCCMKSQFFLVLIE 103
           F+I  +Y +  I+WT      C KS  +  ++E
Sbjct: 415 FYIKDSYLVHCISWTFYYMLTCNKSPLYNFMLE 447


>11_03_0044 -
           9198016-9199143,9199579-9199674,9199771-9199846,
           9200330-9200547,9200703-9200918,9201336-9201521,
           9201607-9201708,9201828-9202495,9203248-9203314
          Length = 918

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 287 EIKKYKQ*KNSFSNISSFHLYRQLHDHLLFLLRTIT 180
           E+KK  + KN   +I +F   +QL DH L L   I+
Sbjct: 524 ELKKTLKEKNDAISIQNFRRAKQLRDHELQLRTNIS 559


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 233 HLYRQLHDHLLFLLRTITRC 174
           H+ R LHDH LF   T ++C
Sbjct: 480 HIERILHDHFLFRKLTDSQC 499


>01_05_0740 -
           24809951-24810394,24810622-24810700,24811651-24811809,
           24812083-24812246,24812436-24812624,24813151-24813408,
           24813463-24813951,24814062-24814262,24814368-24814639,
           24814661-24814685,24814776-24814937,24815065-24815104,
           24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 64  YWYVFELVINIWAFY 108
           Y  V EL++N+WAF+
Sbjct: 915 YSRVLELIVNVWAFH 929


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,719,160
Number of Sequences: 37544
Number of extensions: 107042
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)