Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M11
         (297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.2  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              19   9.8  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          19   9.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   9.8  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 251 SNISSFHLYRQLHDHLLFLLRTITR 177
           SN+++F L + + DH +   +TI R
Sbjct: 7   SNVATFRLSKVMLDHTINSKKTIMR 31


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 148  NYNSPINIPQRVIVRNKKSRWSWSCR 225
            NYN+   I +  ++R+ +S  +W  R
Sbjct: 1660 NYNTCDRIKRGTVIRSIRSHSTWDPR 1685


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 188 CVIKKVGGHGAADTSENSKY 247
           C++KKVG   A  T    K+
Sbjct: 65  CMLKKVGFVNADTTFNEEKF 84


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 84  SDKYLGFLLV 113
           SD Y+GFL V
Sbjct: 62  SDTYIGFLFV 71


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 294 LLRNQEI*AIKEQFFQYFEFS 232
           +L+N EI   K  +F Y E S
Sbjct: 486 VLKNTEIFKDKSDWFDYSEVS 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,400
Number of Sequences: 438
Number of extensions: 1674
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)