Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M10
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0008 + 7332224-7332700,7335136-7335153,7335747-7335848,733... 29 1.5
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 28 1.9
10_08_0304 - 16640937-16642877 27 3.4
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 27 3.4
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 27 4.4
01_06_1477 + 37645143-37647425 27 4.4
11_04_0027 - 12453488-12453547,12454972-12455673,12455907-124559... 27 5.9
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 27 5.9
09_02_0015 - 2980811-2980924,2981231-2981266,2981447-2981519,298... 27 5.9
07_03_0382 + 17470508-17470807,17471449-17474517 27 5.9
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799... 27 5.9
02_03_0154 + 15797731-15798798 27 5.9
09_06_0265 + 21933913-21933993,21934108-21934404 26 7.7
>05_03_0008 +
7332224-7332700,7335136-7335153,7335747-7335848,
7336927-7337202,7337474-7337674
Length = 357
Score = 28.7 bits (61), Expect = 1.5
Identities = 25/90 (27%), Positives = 34/90 (37%)
Frame = +1
Query: 34 RTISRRAMRVTGLDPAGPRWGGNNLALNQQSGQYVEAIHTDGGLLGIFDRIAHGDFYPNG 213
R + R + V D AG G+N G+ + +H+ F R G N
Sbjct: 235 RLVPRMTVDVNFSDVAGESEAGSNQGT---PGRPLHHVHSISPSTASFARSPFGSLQHNS 291
Query: 214 GRNPQPGCWVSTCSHSRAYEVFASTVRTNH 303
G P+ ST S SR FA+T H
Sbjct: 292 GHTPRSPATFSTASPSR----FAATGNQGH 317
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 28.3 bits (60), Expect = 1.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 124 SGQYVEAIHTDGGLLGIFDRIAHGDFYPNG 213
+G Y +H +G + + +++G +YPNG
Sbjct: 571 NGAYTSTVHQNGHAKKLANGLSNGTYYPNG 600
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 184 IAHGDFYPNGGRNPQPGCWVSTCSHSRAYEVFASTVRTNHLQGRLC 321
I HGD GGR + + CSH + + TV + LC
Sbjct: 8 ICHGDMR-RGGRGGGDAVFTAECSHQFHFHCISGTVARGRIACPLC 52
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 213 W*ESATRLLGQHLLSQSCIRSICIDCPNQSLTRKTLL*HKPSSEQS 350
W ++ T + +LL+++ R DCP S+ + TLL P S S
Sbjct: 494 WADTLTDISVGYLLTEAS-RGANTDCPGTSVVKNTLLLENPCSYDS 538
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 214 GRNPQPGCWVSTCSHSRAYEVFASTVRTNHLQ 309
G++ +PGC ++TC+H RA + +V +Q
Sbjct: 264 GKDGRPGCVMNTCAH-RACPLHLGSVNEGRIQ 294
>01_06_1477 + 37645143-37647425
Length = 760
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 145 IHTDGGLLGIFDRIAHGDFYPNGGRNPQPGCWVSTCSHSRAYEVFASTV 291
+HTD +G F + HG F N PG V A V A TV
Sbjct: 291 LHTDPVAIGSFAAMQHGIFVSTSAGNDGPGLSVLHNGAPWALTVAAGTV 339
>11_04_0027 -
12453488-12453547,12454972-12455673,12455907-12455940,
12456005-12456125,12456509-12457139
Length = 515
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 109 ALNQQSGQYVEAIHTDGGLLGIFDRI 186
+L Q Y +A+H+D L +FDR+
Sbjct: 149 SLGQPGRSYAQAVHSDIPLKSVFDRL 174
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 173 IPSKPPSVWIASTYCPDC*FRARLFPPHLGPAGS--RPVT 60
+P +P S + +S+ CP + + P H G +GS PVT
Sbjct: 69 LPQRPRSSYSSSSPCPHAFTTSTVAPSHPGSSGSVDPPVT 108
>09_02_0015 -
2980811-2980924,2981231-2981266,2981447-2981519,
2981608-2981882,2982286-2982504,2983537-2983828,
2983863-2984221,2984634-2984714,2984746-2984889,
2985235-2985538,2985617-2985849
Length = 709
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 151 TDGGLLGIFDRIAHGDFYPNGGRNPQPGCWVST 249
++GG + + DR+ + NG R P G WV +
Sbjct: 582 SNGGTINLPDRVVCLNLQVNGSRVPLVGTWVKS 614
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 191 TVTFIRTVVGIRNPVAGSALALTVVHTKYLHRL 289
TVT ++TV+ +NP+ L KYLH L
Sbjct: 538 TVTSLKTVILYKNPLRNQGLDKLFKGLKYLHVL 570
>06_01_1023 -
7996240-7996369,7997166-7997260,7997430-7997515,
7998034-7998184
Length = 153
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 46 RRAMRVTGLDPAGPRWGGNNLALNQQSGQYV 138
RR R G DP P WGG + G+ V
Sbjct: 11 RRRRRGGGSDPPSPMWGGGRRRAVSRRGKLV 41
>02_03_0154 + 15797731-15798798
Length = 355
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 243 DPATGLRIPTTVRIKVTVSDAVKDTE 166
D +GLR P +V +V VSDA D +
Sbjct: 106 DVVSGLRTPVSVPPQVVVSDAAADAD 131
>09_06_0265 + 21933913-21933993,21934108-21934404
Length = 125
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 177 KDTE*ATISVDSFNVLSRLL 118
++ E TISVD FN L RLL
Sbjct: 57 EEAEVCTISVDRFNTLGRLL 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,265,337
Number of Sequences: 37544
Number of extensions: 226965
Number of successful extensions: 549
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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