Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M10
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p... 28 1.7
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 28 2.3
Z81510-4|CAB04164.1| 839|Caenorhabditis elegans Hypothetical pr... 26 6.9
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 26 6.9
Z50109-9|CAA90440.2| 367|Caenorhabditis elegans Hypothetical pr... 26 9.1
U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan sulphot... 26 9.1
AB038044-1|BAB62394.1| 852|Caenorhabditis elegans N-deacetylase... 26 9.1
AB037943-1|BAB61758.1| 696|Caenorhabditis elegans N-deacetylase... 26 9.1
AB037942-1|BAB61757.1| 814|Caenorhabditis elegans N-deacetylase... 26 9.1
AB037941-1|BAB61756.1| 826|Caenorhabditis elegans N-deactylase/... 26 9.1
>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
protein C32E8.11 protein.
Length = 1927
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 226 QPGCWVSTCSHSRAYEVFASTVRTN 300
Q G VSTCSHS YE + S N
Sbjct: 1199 QYGVDVSTCSHSMHYECYRSLAEAN 1223
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 27.9 bits (59), Expect = 2.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 214 GRNPQPGCWVSTCSHSRAYEVFAS-TVR-TNHLQGRLCSNINQAQNNQC 354
G P C STC H E F T R ++ G+LC ++ ++ C
Sbjct: 940 GAVSDPMCSSSTCKHGECSETFNDFTCRCSDGSTGKLCDKVDYCKDASC 988
>Z81510-4|CAB04164.1| 839|Caenorhabditis elegans Hypothetical
protein F21D9.5 protein.
Length = 839
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 256 ESKC*PSNRVADSYHRSD--KSHRERCGQRYRVSH 158
+S C + V RS ++HRERC + YR+ H
Sbjct: 529 QSSCYVFHSVTSICFRSQAGRAHRERCLEYYRICH 563
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 145 IHTDGGLLGIFDRIAHGDFYPNGGRN 222
+HTDGG G D H D + +GG +
Sbjct: 37 VHTDGGHHGHMDTHHHHDSHHHGGHH 62
>Z50109-9|CAA90440.2| 367|Caenorhabditis elegans Hypothetical
protein C09H10.9 protein.
Length = 367
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 166 LGIFDRIAHGDFYPNGGRNPQPGCWVSTCSHSRAYEVFASTVRTNHLQGRLCSNIN 333
L +FD AH ++P+ + + G + TCS+S + FA + N + + ++N
Sbjct: 217 LTLFD--AHQHYWPDNKKTYKHGALIGTCSYSNLHS-FAKWIE-NFVYPDVADHVN 268
>U52002-7|AAB37730.3| 715|Caenorhabditis elegans Heparan
sulphotransferase protein 1 protein.
Length = 715
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 164 YSVSLTASLTVTFIRTVVGIRNPVAGSALALTVVHTKYLHRLSEP 298
Y + +S TVTF ++ NP A A V H K + L P
Sbjct: 499 YMSNFPSSSTVTFEKSATYFDNPSAPKQAASLVPHAKIVIILQNP 543
>AB038044-1|BAB62394.1| 852|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 852
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 164 YSVSLTASLTVTFIRTVVGIRNPVAGSALALTVVHTKYLHRLSEP 298
Y + +S TVTF ++ NP A A V H K + L P
Sbjct: 636 YMSNFPSSSTVTFEKSATYFDNPSAPKQAASLVPHAKIVIILQNP 680
>AB037943-1|BAB61758.1| 696|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 696
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 164 YSVSLTASLTVTFIRTVVGIRNPVAGSALALTVVHTKYLHRLSEP 298
Y + +S TVTF ++ NP A A V H K + L P
Sbjct: 480 YMSNFPSSSTVTFEKSATYFDNPSAPKQAASLVPHAKIVIILQNP 524
>AB037942-1|BAB61757.1| 814|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 814
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 164 YSVSLTASLTVTFIRTVVGIRNPVAGSALALTVVHTKYLHRLSEP 298
Y + +S TVTF ++ NP A A V H K + L P
Sbjct: 598 YMSNFPSSSTVTFEKSATYFDNPSAPKQAASLVPHAKIVIILQNP 642
>AB037941-1|BAB61756.1| 826|Caenorhabditis elegans
N-deactylase/N-sulfotransferase protein.
Length = 826
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 164 YSVSLTASLTVTFIRTVVGIRNPVAGSALALTVVHTKYLHRLSEP 298
Y + +S TVTF ++ NP A A V H K + L P
Sbjct: 610 YMSNFPSSSTVTFEKSATYFDNPSAPKQAASLVPHAKIVIILQNP 654
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,328,545
Number of Sequences: 27780
Number of extensions: 176030
Number of successful extensions: 373
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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