Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M08
         (155 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    26   4.2  
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    26   4.2  
AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a prot...    25   9.6  

>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 126 LFH*SRKSFINLTKYLLHFVRFFFNHKCINIQ 31
           L+   RK+  N+TK++  F+ F     CI+++
Sbjct: 116 LYDSKRKNQKNMTKFITSFINFLKAKDCIHVK 147


>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.4 protein.
          Length = 1100

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 141 LNSDYLFH*SRKSFINLTKYLLHFVRFFFNHKCINI 34
           LNSD+        F+N+  + L+FVR  FN K I++
Sbjct: 449 LNSDF-----EALFLNMENWQLYFVRSVFNLKMIDL 479


>AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a protein
           protein 50, isoforma protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 126 LFH*SRKSFINLTKYLLH----FVRFFFNHKCINIQ 31
           L H SR   +N TK +      FV FF + KCI+++
Sbjct: 115 LKHASRARIMNCTKNIRDTVTTFVEFFKSEKCIHVK 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,498
Number of Sequences: 27780
Number of extensions: 32218
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)