Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M07
(480 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 148 4e-38
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 148 4e-38
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 1.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 5.2
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 5.2
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 6.9
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 6.9
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 9.1
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 148 bits (358), Expect = 4e-38
Identities = 67/83 (80%), Positives = 76/83 (91%)
Frame = +2
Query: 230 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 409
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 410 VRIPNEQGLLSFWRGNFDNVIRY 478
VRIP EQG LS+WRGN NVIRY
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRY 83
Score = 24.6 bits (51), Expect = 0.56
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 317 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWRGNFDNVIR 475
P + V+ + +Q S + + YK + + I +G +F++G F N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 148 bits (358), Expect = 4e-38
Identities = 67/83 (80%), Positives = 76/83 (91%)
Frame = +2
Query: 230 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 409
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 410 VRIPNEQGLLSFWRGNFDNVIRY 478
VRIP EQG LS+WRGN NVIRY
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRY 83
Score = 24.6 bits (51), Expect = 0.56
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 317 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPNEQGLLSFWRGNFDNVIR 475
P + V+ + +Q S + + YK + + I +G +F++G F N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 23.0 bits (47), Expect = 1.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 478 VPDDIVEVTTPE*EQTLLIGNADEGVDDTLVAL--VLGDLF 362
+PD E+T P E+T+ I N E + +T V +L D F
Sbjct: 364 IPDK--EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402
Score = 22.2 bits (45), Expect = 3.0
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -1
Query: 480 KYLMTLSKLPRQNESRPCSLGMRTKASTIPL*RWSSAICLLTCWTWSSNLTRSMGATAVL 301
K+LM L + CSL + + + +PL T SSN+ + G
Sbjct: 502 KFLMHKDSLGLSTATSTCSLAVAKQQNQVPL-------------TSSSNVNNNSGNGNTN 548
Query: 300 ETAAEIPPARKSLANATGS 244
+A + PA +S++ +GS
Sbjct: 549 SSARDSSPAIESISVDSGS 567
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 5.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 372 AICLLTCWT 346
A C+L+CWT
Sbjct: 103 ATCVLSCWT 111
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 5.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 372 AICLLTCWT 346
A C+L+CWT
Sbjct: 156 ATCVLSCWT 164
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.0 bits (42), Expect = 6.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 97 DHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 204
D ++P I+NR + G S P + K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.0 bits (42), Expect = 6.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 10 FSAAPPCRTARERDRS 57
F + P C+ + +RDRS
Sbjct: 74 FKSLPRCQLSNKRDRS 89
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 20.6 bits (41), Expect = 9.1
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -2
Query: 170 THGMEKPRKTNPRFLIRRFGVIS 102
THG P LIR G +S
Sbjct: 55 THGKGTPTVVKTNILIRSMGPVS 77
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,391
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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