Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M06
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   195   3e-51
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   195   3e-51
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   195   3e-51
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    84   1e-17
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   0.71 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   2.9  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   6.6  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   6.6  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    24   8.7  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    24   8.7  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  195 bits (475), Expect = 3e-51
 Identities = 96/102 (94%), Positives = 100/102 (98%)
 Frame = +3

Query: 123 MARTKQTARKSTGGKAPRKQLATKAAR*SAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 302
           MARTKQTARKSTGGKAPRKQLA+KAAR +AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 303 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV 428
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLV 102


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  195 bits (475), Expect = 3e-51
 Identities = 96/102 (94%), Positives = 100/102 (98%)
 Frame = +3

Query: 123 MARTKQTARKSTGGKAPRKQLATKAAR*SAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 302
           MARTKQTARKSTGGKAPRKQLA+KAAR +AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 303 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV 428
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLV 102


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  195 bits (475), Expect = 3e-51
 Identities = 96/102 (94%), Positives = 100/102 (98%)
 Frame = +3

Query: 123 MARTKQTARKSTGGKAPRKQLATKAAR*SAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 302
           MARTKQTARKSTGGKAPRKQLA+KAAR +AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 303 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV 428
           LLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLV 102


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 43/68 (63%), Positives = 55/68 (80%), Gaps = 6/68 (8%)
 Frame = +3

Query: 243 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD----FKTD--LRFQSAAIGALQ 404
           RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +    F TD  LR+QS A+  LQ
Sbjct: 21  RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQ 80

Query: 405 EASEAYLV 428
           EA+EA+LV
Sbjct: 81  EAAEAFLV 88


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 228 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAA 389
           + + HR +    +L E + +++ S  LLI   P Q  +RE+A   DF    +F   +   
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566

Query: 390 IGALQEASEAYL 425
           + A  E  EAY+
Sbjct: 567 LEAPDEEQEAYI 578


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 264 ALREIRRYQKSTELLIRKLPFQR 332
           A RE+++ ++  EL++  LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 210 APSTGGVKKPHRYRPGTVALREIRRY 287
           APS  G K P    P T+ + EIRR+
Sbjct: 25  APSGLGWKSPSLAEPFTLPISEIRRF 50


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 377 ETKIGFKVLSNFSNESLERQLADQQLRRF 291
           + + GFK +  FSNE L+ +L +   + +
Sbjct: 606 QQEFGFKYVQEFSNEDLQGKLIEANEKNY 634


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 210 APSTGGVKKPHRY--RPGTVALREIRRYQKSTELLIRKLP 323
           APS+G   + +    R    +LR++RR  ++TE++  +LP
Sbjct: 439 APSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELP 478


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 136 SKQPVNLQEVKLLANNWLLKRRDNRHPVLVELRNPIV 246
           S QP  +++ KLL + + ++ RD   P L+ +   +V
Sbjct: 137 SVQPTRVKKEKLLNSIYDVRSRDPESPKLITMEQELV 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,100
Number of Sequences: 5004
Number of extensions: 31254
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)