Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M03
(373 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 108 3e-25
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 104 5e-24
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 29 0.18
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.2
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 26 1.6
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 2.9
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 3.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 3.8
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 5.0
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 24 6.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 24 6.7
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.7
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 24 6.7
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 24 8.8
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 108 bits (259), Expect = 3e-25
Identities = 51/104 (49%), Positives = 72/104 (69%)
Frame = +1
Query: 58 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 237
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 238 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTE 369
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTE 105
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 104 bits (249), Expect = 5e-24
Identities = 49/104 (47%), Positives = 71/104 (68%)
Frame = +1
Query: 58 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 237
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 238 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTE 369
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTE 105
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.18
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 83 TFWFATICFILGLCLTLVP 27
TFWF +IC IL +C + P
Sbjct: 281 TFWFQSICLILYICFSSTP 299
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +1
Query: 118 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 297
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 298 VTK 306
++K
Sbjct: 1170 LSK 1172
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 27 RHEGQTKP*YEANSCKPKGEDS*ESHRPCEIAFGDSE 137
RH+ Q +P E S PK + + E++ P F + E
Sbjct: 93 RHDRQNEPVIEEPSSHPKNQKNQENNEPTSEEFEEGE 129
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 2.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 251 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 162
+SS PNH ++ RGLT ST K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 92 GIFTFWFATICFILGLCLTL 33
G+ WFA +CF G LT+
Sbjct: 276 GVVLIWFAWLCFNSGTLLTV 295
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 153 NSARTFHCHQTRFHMDGETLRNLH 82
+S R FH Q+ FH++G N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 5.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 342 MSVHCTHLVLESLGHTFDHVFDMRAYCPNSS*FFFRTE 229
+S H + L + T D ++ + YCPN F + TE
Sbjct: 72 VSSHPYIITLHRVLETEDAIYVVLQYCPNGDLFTYITE 109
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 264 SMLSCRKHDQRCDQGIPIQDACSVRS 341
S L+CR+ +CD G P + C RS
Sbjct: 22 SCLACRRKKLKCDHGRPCSN-CLKRS 46
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 166 FKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 303
F H +VD+ + + E WF + T+CS + N++ VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 7 SPGLQEFGTRVKQSPNMKQIVANQKVKIPESLTVHVKSRLVTVKG 141
+P L R +SP+ Q V ++ KIP ++ L++ G
Sbjct: 203 TPSLSNSQERFSKSPSDGQNVRSRAKKIPSGMSAEESDELLSSSG 247
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 174 VFEVSF*NSARTFHCHQTRFHMDGETLRNLH 82
V E S N A+ FH R + G L NLH
Sbjct: 144 VIEFSSPNIAKPFHAGHLRSTIIGSFLANLH 174
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 369 LSGDTVDREMSV-HCTHLVLESLGHTFDHVFDMRAY 265
L G +D S+ + L++L H D F+ +AY
Sbjct: 242 LQGQKIDNSESLPDILSITLDNLSHPTDEYFEAKAY 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,694
Number of Sequences: 5004
Number of extensions: 30734
Number of successful extensions: 94
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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