Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M03
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 131 2e-31
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 122 7e-29
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 29 1.5
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418... 28 2.7
11_04_0312 - 16259612-16260231,16260264-16262796 27 4.7
12_01_0662 + 5601147-5601176,5601419-5601517,5601601-5601651,560... 27 6.2
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 27 6.2
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920... 26 8.2
06_03_0675 - 23428948-23431389 26 8.2
03_06_0712 - 35683814-35684065,35685296-35685466 26 8.2
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 26 8.2
>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
Length = 190
Score = 131 bits (316), Expect = 2e-31
Identities = 58/105 (55%), Positives = 84/105 (80%), Gaps = 1/105 (0%)
Frame = +1
Query: 55 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RQLKVEKWF 231
MK I+A++ ++IPE +TV V +++VTV+GPRG L RNFKHL +D +++ R+L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 232 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTT 366
G+++ +AA+RT SHV+N+I GVTKG++YKMR VYAHFPIN T
Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASIT 105
>02_01_0029 -
176002-176137,176495-176646,177166-177577,178010-178126,
178260-178322,178964-179167,180605-180687,182394-182516,
182987-183328
Length = 543
Score = 122 bits (295), Expect = 7e-29
Identities = 54/98 (55%), Positives = 77/98 (78%), Gaps = 3/98 (3%)
Frame = +1
Query: 82 VKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RQLKVEKWFGSKKELA 252
++IP +TVHV +++VTV+GPRG L RNFKHL +D +++ R+L+V+ WFG+++ +A
Sbjct: 1 MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60
Query: 253 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTT 366
A+RT SHV+N+I GVTKG++YKMR VYAHFPIN T
Sbjct: 61 AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASIT 98
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +3
Query: 186 HSHG*SSPVESGEMVRF*KRTSCC*DSMLSCRKHDQRCDQGIPIQD 323
HS S+P + E F C + L C H+ C GIP D
Sbjct: 523 HSKAHSAPAAAAE--HFSASPRKCDNDTLGCSNHEDACQTGIPSND 566
>03_01_0567 +
4186620-4186694,4186766-4186852,4187293-4187932,
4188009-4188094,4189620-4190010,4190102-4190172,
4190738-4190856,4191517-4191793
Length = 581
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 157 KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 297
+R+ H D + P Q + +FGS++ ++ + S +EN + G
Sbjct: 255 RRDASHYNGDSSIGAPVQNLTDAYFGSRRSFSSTMDIMSQLENKVDG 301
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +1
Query: 85 KIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRT 264
K+ + H++ L+ L NF + +++ + S K+LAAVRT
Sbjct: 545 KLTAPVCEHLQLLLLRNNSSLHELPENFFQSMQQLAVLDMSNSSIHSLLLSTKDLAAVRT 604
Query: 265 VCSHVENMIKGV 300
+C + + +G+
Sbjct: 605 LCLNDSKVSRGI 616
>12_01_0662 +
5601147-5601176,5601419-5601517,5601601-5601651,
5602822-5602995,5603869-5603928,5604759-5604800
Length = 151
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 372 SLSGDTVDREMS-VHCTHLVLESLGHTFDHVFDM 274
S+ D D E++ + C HL +E L H F +V ++
Sbjct: 77 SMCVDITDNELAYLECIHLFVEILDHFFSNVCEL 110
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -3
Query: 218 TFNWRGLTMRMSTAKCLKFRFRTP---RGPFTVTKRDFTWTVRLSGIFTFWFATICFILG 48
T W GL M + A + F TP RG + + RL+G FW++ CF++
Sbjct: 527 TEGWTGLVMLVLMA--VAFTLATPWFRRGRLRLPRP----LNRLTGFNAFWYSHHCFVIV 580
Query: 47 LCLTLV 30
L +V
Sbjct: 581 YALLIV 586
>11_03_0044 -
9198016-9199143,9199579-9199674,9199771-9199846,
9200330-9200547,9200703-9200918,9201336-9201521,
9201607-9201708,9201828-9202495,9203248-9203314
Length = 918
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 28 GTRVKQSPNMKQIVANQKVKIPESL---TVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 192
GT+++ SP+M + +Q++KIP + TVH + L V R R F+ A I+
Sbjct: 56 GTKMR-SPSMVSMSQSQRIKIPSYVGLSTVHTPALLTPVISSRST--RTFQKTAKTIQ 110
>06_03_0675 - 23428948-23431389
Length = 813
Score = 26.2 bits (55), Expect = 8.2
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = -3
Query: 320 LYW-NPLVT----PLIMFST*EHTVLTAASSFLEPNH--FSTFNWR-GLTMRMSTAKCLK 165
+YW NP + I F+T VL ++ FL ++ F +W G+ R++
Sbjct: 200 IYWPNPFINMWAKKRISFNTTTFGVLDSSGHFLGSDNASFMAADWGPGIMRRLTLDYDGN 259
Query: 164 FRFRTPRGPFTVTKRDFTWTVRLSGIFTFWFATICFILGLC 42
R +++ K D TW V F +CF+ GLC
Sbjct: 260 LRL------YSLNKTDGTWLVTWMA-----FTNLCFVRGLC 289
>03_06_0712 - 35683814-35684065,35685296-35685466
Length = 140
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 151 VLKRNF-KHLAVDIRMVNPRQLKVE 222
VLKR+F + AVD+R +NP+ K E
Sbjct: 5 VLKRHFSRKRAVDVRRINPKVPKEE 29
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 57 EANSCKPKGEDS*ESHRPCEIAFGDSERSSRSSK-TKLQ 170
E+N +P E+ + P AFGD ++ SK KLQ
Sbjct: 715 ESNQYEPVPEEQIDRRLPLVFAFGDDDKLEEKSKHDKLQ 753
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,963
Number of Sequences: 37544
Number of extensions: 203698
Number of successful extensions: 424
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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