Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M03
         (373 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   136   5e-33
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    33   0.065
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    27   3.2  
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p...    27   4.3  
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    26   7.5  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    26   7.5  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    26   7.5  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    26   7.5  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    26   7.5  
AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical ...    26   7.5  
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  136 bits (329), Expect = 5e-33
 Identities = 59/106 (55%), Positives = 80/106 (75%)
 Frame = +1

Query: 55  MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 234
           MK I +N  V  PE +T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 235 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEG 372
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +G
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDG 106


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 33.1 bits (72), Expect = 0.065
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +1

Query: 172 HLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 336
           H+  D++++  ++  ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 337 AHF 345
            +F
Sbjct: 421 LNF 423


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 255 C*DSMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCH 362
           C DSM++C     +CDQG  +Q  C    +   +CH
Sbjct: 21  CEDSMITCPDLKDQCDQGF-VQSQC---PYTCGICH 52


>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 110 WTVRLSGIFTFWFATICFIL 51
           WT +  G++TFW   I +++
Sbjct: 54  WTKQFGGVYTFWMGNIPYVI 73


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 305 LVTPLIMFST*EHTVLTAASSFLEPNHFSTFNWRGLTMRMSTAKCL 168
           L  P +++ + + ++LT   SFL   H  T+       R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AF016449-15|AAG24002.1|  496|Caenorhabditis elegans Cytochrome p450
           family protein 33C9 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 146 RGPFTVTKRDFTWTVRLSGIFTFWFATICFIL 51
           R P    K    WT +   I+TFW  T  +IL
Sbjct: 42  RNPAPGYKAFARWTAKYGDIYTFWLGTRPYIL 73


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 262 TVCSHVENMIKGVTK-GFQYKMRAVYAH 342
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 262 TVCSHVENMIKGVTK-GFQYKMRAVYAH 342
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 262 TVCSHVENMIKGVTK-GFQYKMRAVYAH 342
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 190 TFCSHCKDFLWGITKQGFQCQVCTLVVH 217


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 262 TVCSHVENMIKGVTK-GFQYKMRAVYAH 342
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 262 TVCSHVENMIKGVTK-GFQYKMRAVYAH 342
           T CSH ++ + G+TK GFQ ++  +  H
Sbjct: 50  TFCSHCKDFLWGITKQGFQCQVCTLVVH 77


>AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical
           protein Y51H1A.2 protein.
          Length = 604

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +1

Query: 28  GTRVKQSPNMKQIVANQKVKIPES 99
           G +   S +M+++ +NQK+++P+S
Sbjct: 301 GLKGSSSSSMRRVASNQKIQLPQS 324


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 342 MSVHCTHLVLESLGHTFDHVFDMRAY 265
           M +HC  L++  +   F H+FD+  Y
Sbjct: 63  MKIHCAALLIHCVPRFFLHLFDLYYY 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,125,928
Number of Sequences: 27780
Number of extensions: 177998
Number of successful extensions: 476
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)