Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M02
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    29   0.12 
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   0.62 
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   1.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   3.3  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    24   4.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   5.8  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    24   5.8  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    24   5.8  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    23   7.7  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   7.7  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 29.5 bits (63), Expect = 0.12
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = +3

Query: 99  ISCDKYWKCDN----GVSELKTCGNGLAFDASDS--KYLTENCDYLHN 224
           + CD+ W C+N    G+  L  C NG+    SD   K L    D L N
Sbjct: 30  LKCDRVWPCENCKKRGIPNL--CPNGILVSVSDKLIKLLLSRIDTLQN 75


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 123 CDNGVSELKTCGNGLAFDASDSKYLTENCDYLHNVEC 233
           C N V  LK   NG    +  S+ L+E C Y  N  C
Sbjct: 374 CSNAVKNLKCSANGTPSGSKISQVLSELC-YYDNKAC 409


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 82  PKSSGHLNDSWATTTPRAAASLVPNSS 2
           PK S  LNDSW+  T +     V N +
Sbjct: 299 PKESDGLNDSWSRQTNQVETENVENEA 325


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 43  LSPKNHSNAQMTSASTLTTSHAINTGSVITVFP 141
           L   N +    +SAST T++H++ + ++ ++ P
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVP 71


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 165 DHCRMFSIRKHRYHTSSIYRMRCGEGRSR 79
           +H    S  K  YH  +I+R + G+G  R
Sbjct: 22  NHYAQHSKNKRNYHQLTIFRSKIGKGDLR 50


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 268 VVIGGSSCVLSPHSTLWR*SQFSVRYLESEASKAR 164
           +V+  S  V SP     R    SVR L  EAS+AR
Sbjct: 740 LVVDQSRMVSSPSKVSIRPKMKSVRLLAREASEAR 774


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = -3

Query: 187 ESEASKARPLPHVFNSETPL--SHFQYLSHEM 98
           +  ASK R  P VFNS  P    H    SH +
Sbjct: 107 DEPASKKRRQPSVFNSSVPSLPQHLSTKSHSV 138


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 49  PKNHSNAQMTSASTLTTSHAINTGSVITVFPN 144
           P++HS   + SA T TTS+   + S  +  PN
Sbjct: 134 PEHHSIRTLPSAVTATTSNISTSSSHRSDLPN 165


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 161 IAACFQFGNTVITLPVFI 108
           ++ C  + NTVI  P+F+
Sbjct: 264 LSKCLNYVNTVIVYPIFV 281


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 76  TSASTLTTSHAINTGSVITV 135
           TSA T+ + HA  +GS  T+
Sbjct: 547 TSADTVESKHAAGSGSATTI 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,139
Number of Sequences: 5004
Number of extensions: 22043
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)