Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M02
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0282 + 2093451-2094668 29 0.72
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 28 1.3
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315... 27 2.9
10_01_0001 - 22485-22526,23308-23436,24346-24473,24801-24862,253... 27 2.9
02_02_0365 + 9488328-9488583,9489343-9489495,9491159-9491451,949... 27 3.8
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594... 27 3.8
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 25 8.9
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 25 8.9
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 25 8.9
>11_01_0282 + 2093451-2094668
Length = 405
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 241 GHSLSLQLPLLTAQDCTESSPM 306
GHSL L +LTA D T +SPM
Sbjct: 253 GHSLGAALAVLTAYDITTNSPM 274
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 228 ECGERTQLEPPITTPHCTRLYGIF 299
+ GERT L PP H R++G+F
Sbjct: 144 DSGERTPLPPPSQQQHQDRIHGLF 167
>10_08_1010 +
22230329-22230658,22231033-22231298,22231411-22231528,
22231842-22232050,22232297-22232750
Length = 458
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 250 SCVLSPHSTLWR*SQFSVRYLESEASKARPLPHVFNSETPLSHFQYLSHEM 98
SC+ ++ W L + A++AR + ++++P+S +YLSH +
Sbjct: 298 SCIKRCYNDFWDIVTNYADILFANANEARAFCELSSTDSPMSAARYLSHSV 348
>10_01_0001 -
22485-22526,23308-23436,24346-24473,24801-24862,
25388-25585,25807-25898,26941-26994
Length = 234
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +3
Query: 117 WKCDNGVSELKTCG-NGLAFDASDSKYLTENCDYLHNVECGERTQLEPP 260
W C G E CG + + +C Y + CG +L+PP
Sbjct: 9 WACTGGSQEA-ICGPEASKLAIAVPTISSSSCSYFYRYRCGRYEELKPP 56
>02_02_0365 +
9488328-9488583,9489343-9489495,9491159-9491451,
9491538-9492105,9492503-9493011
Length = 592
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 126 DNGVSELKTCGNGLAFDASDSKYLTENCDYLHNVECGERTQLEP 257
+NG + G A DSK LT+ L C +R +LEP
Sbjct: 13 NNGKRDYIGTETGQALHKQDSKVLTKKTIKLDAPPCSKRPKLEP 56
>01_01_0769 -
5944910-5946613,5946768-5946887,5948243-5948300,
5948544-5948627,5949356-5949456,5949562-5949745,
5950746-5950774,5951134-5951226
Length = 790
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 43 LSPKNHSNAQMTSASTLTTSHAINTGSVITVFPN*KH 153
L P NH + S+ T S A + +FP KH
Sbjct: 490 LQPSNHKKTAVCSSDTANASDACGIANNQVLFPGGKH 526
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +3
Query: 3 DEFGTRLAAALGVVVAQESFKCPDDFGFY 89
D+F + + +G +++ +++K P +FG Y
Sbjct: 472 DQFSEQDISGIGFILSNQTYKPPSNFGPY 500
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 120 KCDNGVSELKTCGNGLAFDASDS 188
+C NG S++ TC +G D S
Sbjct: 453 ECANGSSQITTCSSGKVLDEGSS 475
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 106 HEMW*G*KPKSSGHLNDSWATTTP 35
H +W G P GHL S T TP
Sbjct: 487 HSLWFGFSPHHDGHLCASDLTATP 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,759,929
Number of Sequences: 37544
Number of extensions: 164859
Number of successful extensions: 386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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