Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M02
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 38 0.001
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 37 0.003
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 32 0.091
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 30 0.37
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 30 0.37
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 29 0.64
U41992-3|AAL02507.1| 134|Caenorhabditis elegans Hypothetical pr... 28 1.1
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 28 1.5
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical pr... 27 2.0
U10438-6|AAA19087.1| 429|Caenorhabditis elegans Hypothetical pr... 27 2.0
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 27 2.6
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 27 2.6
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 27 3.4
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 3.4
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z73102-14|CAA97415.1| 297|Caenorhabditis elegans Hypothetical p... 26 6.0
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 26 6.0
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 26 6.0
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 26 6.0
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 26 6.0
Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical pr... 25 7.9
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 25 7.9
AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical ... 25 7.9
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 25 7.9
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
protein H02I12.1 protein.
Length = 1319
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +3
Query: 111 KYWKCDNGVSELKTCGNGLAFDASDSKYLTENCDYLHNV-ECGER-TQLEPPITTP---H 275
KY +C NG + ++ CG L F+ + T+ C Y V ECG + + P ITTP
Sbjct: 707 KYIQCSNGAAIVRRCGESLYFNEA-----TQECTYRDEVPECGSQGSTSSPVITTPGQDQ 761
Query: 276 CTRLYGIFPD 305
+ YGI D
Sbjct: 762 SSNYYGIPSD 771
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 57 SFKCPDDFGFYPHHISCDKYWKCDNGVSELKTCGNGLAFDA 179
+FKC D GF+ C K+ +C NG+S C NGL+F A
Sbjct: 563 AFKCTKD-GFFGVPSDCLKFIRCVNGISYNFECPNGLSFHA 602
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 31.9 bits (69), Expect = 0.091
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 66 CPDDFGFYPHHISCD-KYWKCDNGVSELKTCGNGLAFD 176
CPD G Y + C KY +C N V ++C GL FD
Sbjct: 43 CPDGDGLYA--VGCSSKYLQCVNNVEYEQSCPEGLYFD 78
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +3
Query: 87 YPHHISCDKY-WKCDNGVSELKTCGNGLAFDASDSKYLTEN-CDYLHNV-ECGERTQLEP 257
+ ++ C Y W+C NG KTC L + L +N CD+ +V +C E E
Sbjct: 211 FTDNVKCSPYFWQCSNGKLFRKTCPEKLIY------VLDQNLCDFPESVKDCPEYNGSET 264
Query: 258 PITTPHCT 281
P T
Sbjct: 265 SYRAPKTT 272
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 78 FGFYPHHISCDKYWKCDNGVSELKTCGNGLAFD 176
FG H S + CDNGV + C + L FD
Sbjct: 360 FGIKECHAS---FLSCDNGVGRVIQCADNLVFD 389
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 81 GFYPHHISCDKYWKCDNGVSELKTCGNGLAFDASDSKYLTENCDYLHNV-EC 233
GFY D Y C NG C LAFD +++ + CDY+ NV EC
Sbjct: 220 GFYSFGECSDHYTACSNGYLIPMQCPARLAFD--EARVI---CDYVMNVPEC 266
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 81 GFYPHHISCDKYWKCDNGVSELKTCGNGLAFDASDSKYLTENCDYLHNV-EC 233
GFY D Y C NG C LAFD +++ + CDY+ NV EC
Sbjct: 220 GFYSFGECSDHYTACSNGYLIPMQCPARLAFD--EARVI---CDYVMNVPEC 266
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 29.1 bits (62), Expect = 0.64
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 81 GFYPHHISCDKYWKCDNGVSELKTCGNGLAFD 176
G+ P +C +++C +G+ ++CG G +D
Sbjct: 164 GYKPDVYNCKNFYQCASGLWTQRSCGEGTIWD 195
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 96 HISCDKYWKCDNGVSELKTCGNGLAFDAS 182
H +K+WKC+ G + TC +DA+
Sbjct: 29 HFDSNKFWKCEGGRWIVVTCQINYFYDAT 57
>U41992-3|AAL02507.1| 134|Caenorhabditis elegans Hypothetical
protein F32E10.8 protein.
Length = 134
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 60 FKCPDDFGFYPHHISCDKYWKCDNGVSELKTCGNGL 167
F+C D + CDKY C +G E + C L
Sbjct: 90 FRCTDSSSCIAPNRVCDKYKDCRDGSDERENCNQPL 125
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = +3
Query: 135 VSELKTCGNGLAFDASDSKYLTEN-----CDYLHNVE--CGERTQLEP 257
+ E +TCG+ ++F A KYL++ D + +++ C E ++++P
Sbjct: 69 IIECRTCGHSISFHAEPLKYLSQEDLDTYTDQISDLQTCCSELSEIDP 116
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 28 PPSA*LSPKNHSNAQMTSASTLTTSHAINTGSV 126
PPS +S +NH N Q TS+ ++S GS+
Sbjct: 576 PPSVRVSTQNHQNQQRTSSFDESSSGGEEGGSI 608
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 28 PPSA*LSPKNHSNAQMTSASTLTTSHAINTGSV 126
PPS +S +NH N Q TS+ ++S GS+
Sbjct: 576 PPSVRVSTQNHQNQQRTSSFDESSSGGEEGGSI 608
>Z80214-3|CAB02265.1| 249|Caenorhabditis elegans Hypothetical
protein T23B5.3c protein.
Length = 249
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 28 PPSA*LSPKNHSNAQMTSASTLTTSHAINTGSV 126
PPS +S +NH N Q TS+ ++S GS+
Sbjct: 9 PPSVRVSTQNHQNQQRTSSFDESSSGGEEGGSI 41
>U10438-6|AAA19087.1| 429|Caenorhabditis elegans Hypothetical
protein B0280.9 protein.
Length = 429
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 141 ELKTCGNGLAFDASDSKYLTENCDYLHNVECGERTQLEPPITTP-HCTRLYGIFPD 305
E+ G+ + +S +YL + +N+E E TQL+PP T P RL+ I D
Sbjct: 172 EIADKGHSVICSSSRKEYLMQ-----YNMETREVTQLKPPNTVPKQGIRLFAISHD 222
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 57 SFKCPDDFGFYPHHISCDKYWKCDNGVSELK 149
SFKC D P H C+ +C +G E K
Sbjct: 460 SFKCSADKKCLPFHTRCNGVAECSDGSDEHK 490
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 51 QESFKCPDDFGFYPHHISCDKYWKCDNGVSEL 146
+ FKC D P CDK CD+G EL
Sbjct: 910 EAQFKCGDKKKCIPLTSVCDKEKDCDDGSDEL 941
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 66 CPDDFGFYPHHISCDKYWKCDNGVSELKTCGNGLAFDASDSKYLTENCDYLHNV-EC 233
C + G++ + C NG+ + C +GL F + + CDY NV EC
Sbjct: 239 CGEVDGYFSFGRCSSSFSACTNGIPIVMFCPDGLMFSEKN-----QMCDYEWNVDEC 290
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)
Frame = +3
Query: 69 PDDFGFYPHHISCDKYWKCDNGVSE----------LKTCGNGLAFDASDSKYLTENCDYL 218
P+D FY HH D W+ S+ K C + FD + +N D L
Sbjct: 295 PNDPTFYMHHAFIDNLWEKFRQNSQTREERENQWATKNCNDNHGFDVQMKPFTIQNRDGL 354
Query: 219 HNVECGERTQLEPPITTPHCT 281
N E + +P HC+
Sbjct: 355 SNQYTDEWYEYQP---VRHCS 372
>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical
protein F20D12.2 protein.
Length = 1116
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 196 RYLESEASKARPLPHVFNSETPLSHFQ-YLSHEM 98
+Y S A + RPLPH SE ++ YL H +
Sbjct: 329 QYARSAADQERPLPHELRSEKIMNQTTCYLLHNV 362
>Z73102-14|CAA97415.1| 297|Caenorhabditis elegans Hypothetical
protein B0035.13 protein.
Length = 297
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 84 FYPHHISCDKYWKCDNGVSELKTCGNGLAFDASDSKYLT 200
FY ++ +K + E C NGL AS S +LT
Sbjct: 244 FYKESMNAGASFKVCSSSDESNDCSNGLLITASVSDHLT 282
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 QESFKCPDDFGFYPHHISCDKYWKCDNGVSELKTCGNGLAFDASDSKYLTENCDY-LHNV 227
+ESF C GFY + +K ++C TC NG + K C Y
Sbjct: 562 RESFSCDCPPGFYGNGCEQEKMFRCLK-----STCQNGGVCINEEEKGRKCECSYGFSGA 616
Query: 228 ECGERTQL 251
C E+ L
Sbjct: 617 RCEEKINL 624
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 135 VSELKTCGNGLAFDASDSKYLTENCDYLHNVECGERTQLEPPITTP-HCT 281
VSEL+ CGNG+ D S E CD CG R + P P CT
Sbjct: 434 VSELRECGNGVV-DGS------EECD------CGSRENCQDPCCDPLTCT 470
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 51 QESFKCPDDFGFYPHHISCDKYWKCDNGVSELKTCGNGLAFDASDSKYLTENCDY-LHNV 227
+ESF C GFY + +K ++C TC NG + K C Y
Sbjct: 562 RESFSCDCPPGFYGNGCEQEKMFRCLK-----STCQNGGVCINEEEKGRKCECSYGFSGA 616
Query: 228 ECGERTQL 251
C E+ L
Sbjct: 617 RCEEKINL 624
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 135 VSELKTCGNGLAFDASDSKYLTENCDYLHNVECGERTQLEPPITTP-HCT 281
VSEL+ CGNG+ D S E CD CG R + P P CT
Sbjct: 434 VSELRECGNGVV-DGS------EECD------CGSRENCQDPCCDPLTCT 470
>Z81133-3|CAB03443.3| 527|Caenorhabditis elegans Hypothetical
protein T28B8.5 protein.
Length = 527
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 87 YPHHISCDKYWKCDNGVSELKTCGNGLAFDASDSKYLTENCDYLHNVECGERTQLE 254
Y H + +Y CDNGV +T N D +S TE D L + +C + +++
Sbjct: 313 YSHASNTTQYVSCDNGV---QTLSNLNCVDLINSADSTE-FDVLTDCDCPQPCEID 364
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 46 SPKNHSNAQMTSASTLTTSHAINT 117
+PK+ S+ M S +L SH +NT
Sbjct: 163 TPKSSSDTSMRSLRSLDISHVVNT 186
>AL132904-5|CAC35837.2| 406|Caenorhabditis elegans Hypothetical
protein Y111B2A.9a protein.
Length = 406
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +1
Query: 52 KNHSNAQMTSASTLTTSHAINTGSVITVFP 141
+N SN++ + +SH++ G ++ FP
Sbjct: 125 RNRSNSEAQPGLRMRSSHSLGNGGLLVFFP 154
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 46 SPKNHSNAQMTSASTLTTSHAINT 117
+PK+ S+ M S +L SH +NT
Sbjct: 163 TPKSSSDTSMRSLRSLDISHVVNT 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,038,408
Number of Sequences: 27780
Number of extensions: 131908
Number of successful extensions: 423
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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