Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M01
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 26 1.1
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 1.9
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 2.6
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 2.6
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 24 4.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 24 4.5
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 4.5
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc... 24 5.9
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 23 7.9
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 23 7.9
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 305 NDVLLFSRTVRVPPFFSPPICLT 237
NDV L ++TV P FF+P +C T
Sbjct: 300 NDVEL-AKTVGTPAFFAPELCWT 321
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 122 SETVYSVSPKAGCTTRRLYISLSVRRTRLLKSPRNQP 232
SET S S K+G T+RR S R + LK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 216 LFSNRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFA 100
L S R + + + LL + A+G E SE +IP+F+
Sbjct: 434 LRSKRSIKQEPWVRELLEIFIAYGYFEVPESEEVIPKFS 472
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 2.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 80 VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRLLKSPRNQPSWLSK 247
++ S ++RG T E V + G T+ Y SLS+ +K +N P SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 198 LLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFANFL 91
LL LI+ +L + FG T Y +S +I+ + N L
Sbjct: 27 LLVLSLIFYILYI--CFGTTSYILSGIILGAYVNSL 60
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 24.2 bits (50), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 307 RMMSCFSAGLYECLHSFHRLFA*PRRLVSWAFQQ 206
++ S AG +ECLH F F+ P + W ++
Sbjct: 413 KLWSRGDAGAFECLHVFS--FSSPVNCIDWNLRE 444
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 24.2 bits (50), Expect = 4.5
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Frame = -3
Query: 207 NRVLLTDKLI--YSLLVVHP---AFGETEYTVSEVII 112
+++L + LI YSL V+H FG+T+YT+S +++
Sbjct: 994 HKILALNCLITAYSLSVLHLDGIKFGDTQYTISGMLM 1030
>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 23.8 bits (49), Expect = 5.9
Identities = 8/41 (19%), Positives = 20/41 (48%)
Frame = +1
Query: 127 NGVLRFSKSRMYHKKAIYKFVGQKNPIAEKPKKPTVVVKQI 249
N ++ + + + + ++ K E+P KPT++ Q+
Sbjct: 14 NPLVSYERVGALQNRFVQHYLNYKANKVEQPPKPTIITSQV 54
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 185 LSVRRTRLLKSPRNQPSWLSK*AVK 259
L + ++ L+K P N P W+ A+K
Sbjct: 13 LYLSKSPLIKKPENLPEWILPEAMK 37
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 217 PKKPTVVVKQIGGEKNGGTRTVLLKSR 297
PK PT + K + E G+ VLL S+
Sbjct: 295 PKDPTALTKFLAAEALRGSGAVLLTSQ 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,940
Number of Sequences: 5004
Number of extensions: 23329
Number of successful extensions: 75
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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