Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M01
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0910 - 22522465-22522473,22522565-22522651,22522707-225227... 30 0.32
01_07_0229 + 42161770-42164562 29 0.56
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 28 1.3
02_05_0156 + 26341904-26342801,26343469-26344148 27 2.3
10_08_0187 + 15592130-15592512,15592597-15592972 26 5.2
08_01_0086 - 629043-629594 26 5.2
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 26 6.9
06_03_0039 + 15791968-15792036,15793317-15793847,15799797-158001... 26 6.9
01_06_1288 - 36007432-36007851 26 6.9
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621... 26 6.9
12_01_0175 + 1304138-1304255,1304597-1304793,1304873-1304953,130... 25 9.2
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139... 25 9.2
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457... 25 9.2
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 25 9.2
>08_02_0910 -
22522465-22522473,22522565-22522651,22522707-22522768,
22523170-22523697,22524954-22525047
Length = 259
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 151 SRMYHKKAIYKFVGQKN-PIAEKPKKPTVVVKQI 249
S YHK IYKFV +KN P+ E+ V+ +I
Sbjct: 213 SGFYHKTHIYKFVKKKNLPLIERELTENVIPNEI 246
>01_07_0229 + 42161770-42164562
Length = 930
Score = 29.5 bits (63), Expect = 0.56
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 125 ETVYSVSPKAGCTTRRLYISLSVRRTRLLKS 217
+T + SPKA T R+ Y+S S+R T LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 267 SILFTAYLLNHDGWFLGLFSNRVLLTDKLIYSLLVV 160
SI + + L + WFL + SN+VL T +++ L ++
Sbjct: 393 SIHYRIHFLKANFWFLTIVSNKVLPTQRVVVFLTIL 428
>02_05_0156 + 26341904-26342801,26343469-26344148
Length = 525
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 269 PPFFSPPICLTTTVGFLGFSAIGFF 195
PPF P + T V FL F ++G F
Sbjct: 63 PPFHDPALLGETDVAFLAFYSLGMF 87
>10_08_0187 + 15592130-15592512,15592597-15592972
Length = 252
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +3
Query: 81 CQEAESWQTEEL*PRKRCTPFLQKQDVPQEGYI*VCRSEEPDC*KAQETNRRG*ANRR 254
C +W T + PRKR + P+E ++E+ D + +E ++ AN R
Sbjct: 162 CDRHIAWSTRKRKPRKRSHSSIVDPPQPKEDPAAAAKAEDDDGVEEEEESKNHGANLR 219
>08_01_0086 - 629043-629594
Length = 183
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -2
Query: 166 CGTSCFWRNGVHRFRGHNS 110
CG C+WR G RG +
Sbjct: 134 CGDGCWWRGGAEERRGEGA 152
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 163 GTSCFWRNGVHRFRG 119
G C W GVHRF G
Sbjct: 466 GEPCAWEFGVHRFNG 480
>06_03_0039 +
15791968-15792036,15793317-15793847,15799797-15800105,
15800256-15800772,15800964-15801163,15801303-15801398
Length = 573
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 165 VVHPAFGETE---YTVSEVIIPRFANFLLLDTAGCGCGGF 55
V HP +T + +++ I ++ ++ AG GCGGF
Sbjct: 276 VAHPTHYDTPLKGFKANKIPITEIHHYAVIVNAGNGCGGF 315
>01_06_1288 - 36007432-36007851
Length = 139
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 193 QKNPIAEKPKKPTVVVKQIGGEKNGG 270
+K P+ EK +K K++ G K GG
Sbjct: 11 EKKPVEEKAEKKPKAEKRVPGAKEGG 36
>01_04_0124 +
16359695-16359734,16360217-16360453,16361133-16362104,
16362211-16362398,16362564-16363942,16364024-16365047,
16365171-16365566,16367484-16367999,16368085-16368226,
16369409-16369553,16371351-16371432,16371851-16371895,
16372018-16372140
Length = 1762
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 99 NFLLLDTAGCGCGGFLRHLGLWWSHNIPSCRI 4
NF + D + G GFLR L +W S I S +
Sbjct: 141 NFGVSDASESGLLGFLRRLLIWHSEKILSVTV 172
>12_01_0175 +
1304138-1304255,1304597-1304793,1304873-1304953,
1305080-1305289,1305426-1305503,1305576-1305878
Length = 328
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 153 AFGETEYTVSEVIIPRFANFLLLDTAGCGCGGFLRHLGLWWSHNIPSC 10
+ + E T++E+I R+ ++ G G FL S++IPSC
Sbjct: 154 SLSQKEKTLNELIQDRWLSYTPTGKIGLGIRSFLDLRSWLRSNDIPSC 201
>11_01_0174 +
1394229-1394346,1394695-1394891,1394972-1395052,
1395184-1395393,1395531-1395608,1395682-1395990
Length = 330
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 153 AFGETEYTVSEVIIPRFANFLLLDTAGCGCGGFLRHLGLWWSHNIPSC 10
+ + E T++E+I R+ ++ G G FL S++IPSC
Sbjct: 154 SLSQKEKTLNELIQDRWLSYTPTGKIGLGIRSFLDLRSWLRSNDIPSC 201
>06_03_0868 -
25544933-25544938,25544939-25545142,25545494-25545751,
25546625-25546906
Length = 249
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 290 FSRTVRVPPFFSPPICLTTTVGFLGFSAI 204
+ +T+ F+S +C T + G L FSA+
Sbjct: 105 YFKTLGTLGFWSQLVCTTVSAGILSFSAV 133
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +1
Query: 121 LGNGVLRFSKSRMYHKKAIYKFVGQKNPIAEKPKKPTVVVK 243
L G+ R S+S YH++ ++ + K KP +
Sbjct: 7 LSQGIKRASRSHTYHRRGLWAIKAKNGGTFPKAGKPAAAAE 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.135 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,891,269
Number of Sequences: 37544
Number of extensions: 165741
Number of successful extensions: 441
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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