Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M01
         (308 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022444-1|AAH22444.1|  288|Homo sapiens ribosomal protein L6 pr...    53   1e-07
D17554-1|BAA04491.1|  288|Homo sapiens DNA-binding protein TAXRE...    53   2e-07
BC104826-1|AAI04827.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
BC104824-1|AAI04825.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
BC071912-1|AAH71912.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
BC032299-1|AAH32299.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
BC031009-1|AAH31009.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
BC020679-1|AAH20679.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
BC004138-1|AAH04138.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
AF261087-1|AAF99680.1|  289|Homo sapiens DNA-binding protein TAX...    53   2e-07
AB042820-1|BAB17292.1|  288|Homo sapiens ribosomal protein L6 pr...    53   2e-07
S71022-1|AAB30819.1|  207|Homo sapiens neoplasm-related C140 pro...    42   5e-04
X69391-1|CAA49188.1|  288|Homo sapiens ribosomal protein L6 prot...    37   0.010

>BC022444-1|AAH22444.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  GV R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGVGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>D17554-1|BAA04491.1|  288|Homo sapiens DNA-binding protein
           TAXREB107 protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>BC104826-1|AAI04827.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>BC104824-1|AAI04825.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>BC071912-1|AAH71912.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>BC032299-1|AAH32299.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>BC031009-1|AAH31009.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>BC020679-1|AAH20679.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>BC004138-1|AAH04138.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>AF261087-1|AAF99680.1|  289|Homo sapiens DNA-binding protein
           TAXREB107 protein.
          Length = 289

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>AB042820-1|BAB17292.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
 Frame = +1

Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTR 276
           RN  L  G+ R+S+S MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR
Sbjct: 46  RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105

Query: 277 TVLLK 291
            V L+
Sbjct: 106 VVKLR 110


>S71022-1|AAB30819.1|  207|Homo sapiens neoplasm-related C140
           product protein.
          Length = 207

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
 Frame = +1

Query: 157 MYHKKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTRTVLLK 291
           MY +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR V L+
Sbjct: 1   MYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLR 49


>X69391-1|CAA49188.1|  288|Homo sapiens ribosomal protein L6
           protein.
          Length = 288

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
 Frame = +1

Query: 166 KKAIYK--FVGQKNPIAEKPKKPTV--VVKQIGGEKNGGTRTVLLK 291
           +KA+YK  +   K+ + +K K+  +  V K +GG+KNGGTR V L+
Sbjct: 65  RKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLR 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.316    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,532,086
Number of Sequences: 237096
Number of extensions: 897979
Number of successful extensions: 5880
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5869
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)