Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_M01
(308 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 34 0.023
Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z81584-2|CAE53738.1| 298|Caenorhabditis elegans Hypothetical pr... 27 3.5
AC006748-3|AAF60513.2| 382|Caenorhabditis elegans Hypothetical ... 26 4.7
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 26 6.2
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 26 6.2
U13071-4|AAA20671.1| 510|Caenorhabditis elegans Hypothetical pr... 26 6.2
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 26 6.2
Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical p... 25 8.1
Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical p... 25 8.1
Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical pr... 25 8.1
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 33.9 bits (74), Expect = 0.023
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 109 RNYDLGNGVLRFSKSRMYHKKAIYKFVGQKNPIAEKPK 222
RN+DL GVLRFS SR+ KK K K+ A+ PK
Sbjct: 12 RNFDLSPGVLRFSASRLRLKKGEKKPKFTKDTSAKLPK 49
>Z99942-1|CAB17068.2| 454|Caenorhabditis elegans Hypothetical
protein H13N06.2 protein.
Length = 454
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 248 ICLTTTVGFLGFSAIGFF*PTNLYIAFLWY 159
+C +TVG GF A G P +IA WY
Sbjct: 7 VCALSTVGVEGFGAPGIV-PPESFIAERWY 35
>Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical
protein T04C12.2a protein.
Length = 334
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 239 TTTVGFLGFSAIGFF*PTNLYIAFLWYILLLEKRSTPFPRS*FLG 105
T + + FS +GFF +Y ++ +++ + F RS FLG
Sbjct: 216 TGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQRSFFLG 260
>Z81584-2|CAE53738.1| 298|Caenorhabditis elegans Hypothetical
protein T04C12.2b protein.
Length = 298
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 239 TTTVGFLGFSAIGFF*PTNLYIAFLWYILLLEKRSTPFPRS*FLG 105
T + + FS +GFF +Y ++ +++ + F RS FLG
Sbjct: 180 TGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQRSFFLG 224
>AC006748-3|AAF60513.2| 382|Caenorhabditis elegans Hypothetical
protein Y39A3B.2 protein.
Length = 382
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 221 LGFSAIGFF*PTNLYIAFLWYILLLEKRSTP 129
+GF + + PT L +A W +++R+ P
Sbjct: 201 IGFHLVQSYIPTGLIVAISWVSFWIDRRAVP 231
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 231 GWFLGLFSNRVLLTDKLIYSLLVVH 157
GWF L V + +KL Y ++VH
Sbjct: 624 GWFQSLLLTSVAVQNKLPYKKIIVH 648
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -3
Query: 276 TSASILFTAYLLNHDGWFLGLFSNRVLLTDKLIYSLLVVHPAFGET--EYTVSEVII 112
TSA ++ A + + DGW +G + ++KL + L AFG + +YT+ +I
Sbjct: 133 TSAPVINAAGVFSRDGWLIGAAATFDSSSNKLAATSL----AFGHSTPQYTLHSFVI 185
>U13071-4|AAA20671.1| 510|Caenorhabditis elegans Hypothetical
protein T22F7.1 protein.
Length = 510
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 293 LFSRTVRVPPFFSPPICLTTT 231
LFS V +P + PICLT T
Sbjct: 374 LFSGVVELPAYLFIPICLTRT 394
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 231 GWFLGLFSNRVLLTDKLIYSLLVVH 157
GWF L V + +KL Y ++VH
Sbjct: 624 GWFQSLLLTSVAVQNKLPYKKIIVH 648
>Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 296 LLFSRTVRVPPFFSPPICLTTTVGF 222
LLF FFS P CLT + GF
Sbjct: 68 LLFVSISHFSAFFSQPTCLTFSSGF 92
>Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 296 LLFSRTVRVPPFFSPPICLTTTVGF 222
LLF FFS P CLT + GF
Sbjct: 68 LLFVSISHFSAFFSQPTCLTFSSGF 92
>Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.6a protein.
Length = 525
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 296 LLFSRTVRVPPFFSPPICLTTTVGF 222
LLF FFS P CLT + GF
Sbjct: 68 LLFVSISHFSAFFSQPTCLTFSSGF 92
>Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical
protein R03G8.3 protein.
Length = 654
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 166 KKAIYKFVGQKNPIAEKPKKPTVVVKQIGGEKNGGTRTVLLKS 294
KK +Y F+ IA PK+PTV V ++ KN ++L S
Sbjct: 161 KKDVYGFL-HTQVIATPPKQPTVKVSEL---KNYDVTVIMLDS 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.135 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,129,261
Number of Sequences: 27780
Number of extensions: 132839
Number of successful extensions: 378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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