Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_M01
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.48 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   1.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   3.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   5.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   5.9  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    20   7.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    20   7.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 102 QTEEL*PRKRCTPFLQKQDVPQEGYI 179
           +T  L PRKRC   L+  ++ + G I
Sbjct: 460 ETLILPPRKRCKMILESMEIERNGLI 485


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 199 NPIAEKPKKPTVVVKQIGGEKNGGTRTVLLK 291
           N +     +P V +KQ G    GG  T L+K
Sbjct: 650 NDLMSPLDEPAVHIKQEGQSPEGGKLTRLIK 680


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 215 FSAIGFF*PTNLYIAFLWYILLLEK 141
           +S IGF     L+I   W ILL +K
Sbjct: 365 YSRIGFPILFMLFIILYWPILLFKK 389


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 255 TAYLLNHDGWFLGLFSNRVL 196
           + Y+LN+DG +  ++S + L
Sbjct: 340 SGYILNNDGKWHNIYSEKGL 359


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 255 TAYLLNHDGWFLGLFSNRVL 196
           + Y+LN+DG +  ++S + L
Sbjct: 340 SGYILNNDGKWHNIYSEKGL 359


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 163 HKKA-IYKFVGQKNPIA 210
           +K+A I K  GQKNP+A
Sbjct: 70  NKRAKIKKASGQKNPLA 86


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +1

Query: 163 HKKA-IYKFVGQKNPIA 210
           +K+A I K  GQKNP+A
Sbjct: 70  NKRAKIKKASGQKNPLA 86


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 95  KLANRGIMTSETVYSVSPKAGCTTRRLY 178
           K+  + ++ S+T  S   + GC + RL+
Sbjct: 256 KMTPQSLLPSQTGLSPYLRFGCLSTRLF 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,344
Number of Sequences: 438
Number of extensions: 1764
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)