Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L23
(475 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 202 2e-53
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 202 2e-53
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 38 0.001
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 26 3.4
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 4.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 4.5
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 4.5
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 4.5
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 5.9
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 25 5.9
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 5.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.8
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 7.8
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 7.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 7.8
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 202 bits (494), Expect = 2e-53
Identities = 93/150 (62%), Positives = 116/150 (77%)
Frame = +1
Query: 22 QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 201
Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EA+ G Y+DKKCPF G
Sbjct: 8 QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60
Query: 202 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 381
VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+
Sbjct: 61 VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119
Query: 382 VTIGECRPLSETVRFNVLKVSRGKGSKKSF 471
VT+G+CRPLS+TVRFNVL+V + K F
Sbjct: 120 VTVGQCRPLSKTVRFNVLRVVKHTEGPKQF 149
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 202 bits (494), Expect = 2e-53
Identities = 93/150 (62%), Positives = 116/150 (77%)
Frame = +1
Query: 22 QTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKKCPFTGN 201
Q+ER+FQKQP +F N KKG G R++KDVGLGFKTP EA+ G Y+DKKCPF G
Sbjct: 8 QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60
Query: 202 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 381
VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+
Sbjct: 61 VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDV 119
Query: 382 VTIGECRPLSETVRFNVLKVSRGKGSKKSF 471
VT+G+CRPLS+TVRFNVL+V + K F
Sbjct: 120 VTVGQCRPLSKTVRFNVLRVVKHTEGPKQF 149
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 229 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 408
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 409 SETVRFNVLKV 441
S T RF ++K+
Sbjct: 64 SATKRFEIIKI 74
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 3.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 168 CAFNGLARRFEA*AHIFVVPKRLTAALHADAFLAIQEDSW-LLLE*TFCLIRHI 10
C+F+GL EA A + PK ++ D ++QE + +L+E T + HI
Sbjct: 210 CSFSGLLSGVEAAATELLDPKNPSSVTKQDLCYSLQETGFAMLVEITERAMAHI 263
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 375 SDLHVPEARR*MNRHVPVSLLKSVVFRQVMEIIAPDNNCSLH 250
+DL + E R ++ +P LLKS+V R ++ +NN S+H
Sbjct: 513 ADLSLDEIREELDARLP--LLKSIVERYLISKKNDNNNESIH 552
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 324 QEHVCSSIALLQGRGDRRHRHNWRVQAA 407
+E + S I + RG+RR R N+R AA
Sbjct: 60 KEFMGSRIVVEPARGERRRRENFRESAA 87
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 369 LHVPEARR*MNRHVPVSLLKSVVFRQVMEII 277
+H PE NR ++++K+V+F+Q+ E++
Sbjct: 48 IHPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 364 VEIGDIVTIGECRPLSETVRFNVLKVS 444
V +GDIVTI C + R +VL ++
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVLPLA 140
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 5.9
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Frame = -3
Query: 224 RIRPRMDTLPVNGHFLSMYVPSTASRGVLK--------PRPTSLWYLRGLRLRFTPMPFL 69
+I+P ++++ + +L+ Y PS R ++ P+ SL +LR ++ P L
Sbjct: 364 QIKPDLESMLIISEYLNEYKPSPKMRELINWLYSNFHLPKTVSLHFLREVQSLVFRYPLL 423
Query: 68 RFK--------KTVGCFWN 36
K K GC WN
Sbjct: 424 HSKIHLAISTLKDSGCDWN 442
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 420 DCLGKRPALANCDDVSDLHVPEARR*MN 337
D +GK P + C + DL+ P + R N
Sbjct: 156 DIVGKMPVMLFCPNCLDLYAPSSSRYKN 183
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 381 DVSDLHVPEARR*MNRHVPVSL 316
DV+ VPEARR RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 369 LHVPEARR*MNRHVPVSLLKSVVFRQVMEIIAPDNN 262
LH PE + H LLK + FR++ E + PDN+
Sbjct: 565 LHTPEDYE-NDVHAVADLLK-IFFRELREPLIPDNH 598
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 79 IGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDK 180
+G S+ L ++ GLG K E G YID+
Sbjct: 103 VGFDVSKPSLPVFENSGLGSKYSTEIANGVYIDE 136
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 7.8
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = -2
Query: 336 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 205
+HV + L FR I DN +LHF H ++ QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 419 TVSESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 309
TV+ + SP SL GD ++FL ++SN
Sbjct: 241 TVNRHKTEGYALDWSPFEYSLLSGDNANEIFLTKYSN 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,835
Number of Sequences: 5004
Number of extensions: 42160
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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