Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L21
         (213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0778 + 20492822-20493920,20494605-20494648                       25   8.3  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    25   8.3  

>10_08_0778 + 20492822-20493920,20494605-20494648
          Length = 380

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 82  PYKLFKILNIETNNHPLRAHTSSPS 8
           PY + K+  I+T   PL+A +SS S
Sbjct: 247 PYYMVKLAGIKTGGAPLQAASSSGS 271


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 151 CKSHQLFQLYI*KTRNYKRINVYPY 77
           C  +  F +Y+ +   Y RIN YP+
Sbjct: 542 CVGYTNFSIYVGECVRYTRINSYPF 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,984,026
Number of Sequences: 37544
Number of extensions: 48897
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)