Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L21
         (213 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK092355-1|BAC03868.1|  752|Homo sapiens protein ( Homo sapiens ...    27   8.3  
AF057694-1|AAC13540.1| 1199|Homo sapiens TBP-associated factor T...    27   8.3  
AF040701-1|AAC68502.1| 1189|Homo sapiens TATA binding protein as...    27   8.3  
AF026445-1|AAC02966.1| 1199|Homo sapiens cofactor of initiator f...    27   8.3  

>AK092355-1|BAC03868.1|  752|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35036 fis, clone OCBBF2016690, weakly similar to
           ZINC FINGER PROTEIN CLONE 647. ).
          Length = 752

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 91  NVYPYKLFKILNIETNNHPLRAHTSS 14
           +VYPYKL+++L ++    P +++ +S
Sbjct: 536 SVYPYKLYRLLPMKCKRAPYKSYRNS 561


>AF057694-1|AAC13540.1| 1199|Homo sapiens TBP-associated factor
           TAFII150 protein.
          Length = 1199

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 82  PYKLFKILNIETNNHPLRAHTSSPSC 5
           PY   KILN+ T N P   +  SP C
Sbjct: 920 PYVRHKILNMLTKNPPFTKNMESPLC 945


>AF040701-1|AAC68502.1| 1189|Homo sapiens TATA binding protein
           associated factor protein.
          Length = 1189

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 82  PYKLFKILNIETNNHPLRAHTSSPSC 5
           PY   KILN+ T N P   +  SP C
Sbjct: 910 PYVRHKILNMLTKNPPFTKNMESPLC 935


>AF026445-1|AAC02966.1| 1199|Homo sapiens cofactor of initiator
           function protein.
          Length = 1199

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 82  PYKLFKILNIETNNHPLRAHTSSPSC 5
           PY   KILN+ T N P   +  SP C
Sbjct: 920 PYVRHKILNMLTKNPPFTKNMESPLC 945


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,043,850
Number of Sequences: 237096
Number of extensions: 286978
Number of successful extensions: 425
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 76,859,062
effective HSP length: 49
effective length of database: 65,241,358
effective search space used: 1370068518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)