Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L21
         (213 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024497-1|AAB70344.1|  329|Caenorhabditis elegans Hypothetical ...    28   1.0  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    25   5.5  
U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily as...    25   9.7  

>AF024497-1|AAB70344.1|  329|Caenorhabditis elegans Hypothetical
           protein ZC308.4 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -1

Query: 141 INFFNCIFEKLEIIK----GLTFTLTNYLKF*ILKQITIHFALTLAH 13
           INF N +FEKLE+I      LT T     K  +LK+ TI+   T+ +
Sbjct: 160 INFQNHVFEKLELINYESIVLTETQVKSCKHLVLKKETIYQEYTVGN 206


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 97  RINVYPYKLFKILNIETNNHPLRAHTSS 14
           +IN+Y  K  KILN    N P+  H  S
Sbjct: 93  QINLYDDKNTKILNKPMENSPINVHEHS 120


>U40029-12|AAA81131.1|  785|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 151 protein.
          Length = 785

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 70  FKILNIET--NNHPLRAHTSSPSCQ 2
           F+I  IE+  + HPL+AH  +P  Q
Sbjct: 296 FQISKIESTVDPHPLKAHNKTPEAQ 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,932,121
Number of Sequences: 27780
Number of extensions: 57482
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)