Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L20
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 163 2e-41
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 159 3e-40
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 28 1.1
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 5.6
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 5.6
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 9.8
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 9.8
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 25 9.8
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 163 bits (395), Expect = 2e-41
Identities = 85/172 (49%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Frame = +2
Query: 35 DINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISL 214
DI H RK +R++ S++V T+++FN+ IL+RLF S+ NRPPIS+
Sbjct: 4 DIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63
Query: 215 SRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEIL 388
S++A K + EG V+VGTV++D RL TVPK++VAAL T+ ARARIL AGGE+L
Sbjct: 64 SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVL 123
Query: 389 TFDQLALRAPTGRKTVLVQCRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 544
T DQLALRAPTG TVL++ +++AREA RHFG P H PYVR++G +
Sbjct: 124 TLDQLALRAPTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRK 172
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 159 bits (385), Expect = 3e-40
Identities = 82/172 (47%), Positives = 114/172 (66%), Gaps = 2/172 (1%)
Frame = +2
Query: 35 DINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISL 214
DI H +K +R++ S++V T+++FN+ IL+RLF S+ NRPPIS+
Sbjct: 4 DIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63
Query: 215 SRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEIL 388
S++A K + + VVVGTV++D R+ TVPK+++AAL T+ ARARIL AGGE+L
Sbjct: 64 SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVL 123
Query: 389 TFDQLALRAPTGRKTVLVQCRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 544
T DQLALRAPTG TVLV+ +++AREA RHFG P H PYVR++G +
Sbjct: 124 TLDQLALRAPTGSNTVLVRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRK 172
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 196 PTSDFFVPFGTPHEEAYTRGFDRCSR 273
P +D F+PF TP +AY + R R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 422 GRKTVLVQCRRNAREAVRHFGPAPGA-PR 505
G L Q RR V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +2
Query: 200 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 379
PP+ S L + T + L ++ + + R+ T+PK+ + L + +R +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 131 PSICTVLPIVSSTHPET*LRCAELSCRVYD 42
P +CTVLPI+ + + + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 395 DQLALRAPTGRKTVLVQCRRNAREAVRHFGPA 490
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 144 FVRLAKYLYSFTN 106
F LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,699
Number of Sequences: 5004
Number of extensions: 42927
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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