Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L20
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 184 6e-47
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 183 1e-46
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 168 2e-42
10_08_0461 - 18113348-18113389,18113683-18114231 30 1.1
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 1.1
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 28 4.3
09_02_0357 + 7788946-7789326,7789620-7789997 27 7.5
09_06_0358 - 22504716-22505588 27 10.0
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 27 10.0
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 10.0
01_01_0512 + 3735005-3735580 27 10.0
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 184 bits (447), Expect = 6e-47
Identities = 94/170 (55%), Positives = 119/170 (70%), Gaps = 6/170 (3%)
Frame = +2
Query: 53 DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 232
++K +RT +S+DV T + FN +IL+RLFMS+ NRPP+S+ RL R
Sbjct: 11 NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70
Query: 233 M--KKPTREGL----IAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTF 394
M K P R + IAV+VGTV++D R+Y VP M VAAL TE ARARI+ AGGE LTF
Sbjct: 71 MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130
Query: 395 DQLALRAPTGRKTVLVQCRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 544
DQLALRAP G+ TVL++ +NAREAV+HFGPAPG P S+TKPYVR+KG +
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 183 bits (445), Expect = 1e-46
Identities = 92/164 (56%), Positives = 114/164 (69%)
Frame = +2
Query: 53 DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 232
++K +RT +S DV T + FN +IL+RLFMS+ NRPP+SL RLA+
Sbjct: 11 NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70
Query: 233 MKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALR 412
M+ E IAV+VGTV++D R+ +PKM V AL TE ARARI+ AGGE LTFDQLALR
Sbjct: 71 MEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129
Query: 413 APTGRKTVLVQCRRNAREAVRHFGPAPGAPRSHTKPYVRTKGHE 544
AP G TVL++ +NAREAVRHFG APG P SHTKPYVR+KG +
Sbjct: 130 APLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 168 bits (409), Expect = 2e-42
Identities = 94/181 (51%), Positives = 116/181 (64%), Gaps = 17/181 (9%)
Frame = +2
Query: 53 DRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPISLSRLARH 232
++K +RT KS DV T + FN +ILRRLFMS+ NRPP+SL RL R
Sbjct: 11 NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70
Query: 233 MKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALR 412
M+ +E IAV+VGTV++D R+Y VP M VAAL TE ARARI+ GGE LTFDQLALR
Sbjct: 71 MEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128
Query: 413 APTGRKT-----------------VLVQCRRNAREAVRHFGPAPGAPRSHTKPYVRTKGH 541
AP G+ T VL++ +NAREAV+HFGPAPG P S+TKPYVR+KG
Sbjct: 129 APLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGR 188
Query: 542 E 544
+
Sbjct: 189 K 189
>10_08_0461 - 18113348-18113389,18113683-18114231
Length = 196
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 368 AAGGEILTFDQLALRAPTGRKTVLVQCRRNAREAVR 475
A GG + +++L L A G V+ C +NA+E +R
Sbjct: 151 AVGGSPVVWEKLGLNASVGEFEVVWSCLKNAKETLR 186
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 331 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 170
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>01_06_1446 - 37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 389 TFDQLALRAPTGRKTVLVQCRRNAREAVRHFGPAPGAP 502
TF QL P+G ++ CRR +A+ H P P P
Sbjct: 923 TFAQLRF-PPSGTSSLDFSCRRLFADAIYHVTPPPSVP 959
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1
Query: 507 ERGAPGAGPK*RTASRALRRH*TSTVLRPVGARRANWSNVRIS--PPAAKMRARA 349
+R A G+G TA R H T R V A RA+ S +R S PP A + + A
Sbjct: 125 KRQALGSGSARSTAPTPPRAHTTPPCSRSVAAPRASTSPLRPSPVPPPATLHSAA 179
>09_06_0358 - 22504716-22505588
Length = 290
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 401 LALRAPTGRKTVLVQCRRNAREAVRHFGPAPGAP 502
L L+ P+GR ++ R RE R++ P+P P
Sbjct: 116 LRLKRPSGRPHGRLEVRVAVREPKRYYDPSPAYP 149
>06_03_0437 -
20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 392 FDQLALRAPTGRKTVLVQCRRNAREAVRHFGPAPGAPRSHTK 517
FD+L L G+ Q RN+++ + +F PG P+ K
Sbjct: 832 FDELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPGVPKIKDK 873
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 269 VVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLAL 409
++G++ DV ++ + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 178 VYEPYQPTSDFFVPFGTPHEEAYTRGFDRCSR 273
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,747
Number of Sequences: 37544
Number of extensions: 326958
Number of successful extensions: 994
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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