Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L19
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...    78   5e-16
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    33   0.017
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    29   0.27 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   2.6  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   3.4  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   3.4  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   4.5  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.9  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   5.9  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    24   7.8  

>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 78.2 bits (184), Expect = 5e-16
 Identities = 37/88 (42%), Positives = 53/88 (60%)
 Frame = +3

Query: 141 KTEQAVNAARRQGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIM 320
           KT+  +N+ARR G  V T++K+  G   Q    ++  K+DRE E          + + I 
Sbjct: 24  KTQSQINSARRAGAIVGTEKKYATGNKSQDPAGQHLTKIDRENEVKPPSTTGRSVAQAIQ 83

Query: 321 QGRQAKGMSQKDLATKICEKPHIVNDYE 404
           +GRQAKG +QKDL+ +I EKP +VNDYE
Sbjct: 84  KGRQAKGWAQKDLSQRINEKPQVVNDYE 111


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 33.1 bits (72), Expect = 0.017
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 108 LRKKPPKASALKTEQAVNAARRQGIPVDTQQKFGAGTN-KQHVTTKNTAKLDRETEELRH 284
           + K   K    K  +A N   R+G+P   +++   G N     T+ NT   D  + +LR 
Sbjct: 439 MSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRL 498

Query: 285 EKIPL 299
           EKI L
Sbjct: 499 EKILL 503


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = +3

Query: 129 ASALKTEQAVNAARRQGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEELRHEKIPLD 302
           ASA K   A  +   QG+PVDTQ++  A      V  K     D     L  EK  LD
Sbjct: 163 ASAYKIVDAFESTINQGVPVDTQEESEAMLFMNLVILKKDGVEDAYKHLLSIEKKVLD 220


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 286 RRYHWIWE 309
           RRYHW+WE
Sbjct: 45  RRYHWVWE 52


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 145 LNKP*MLHAVKVYPLIRNKNLVRGLINNTLQLKTQLNSTEKQKNYAMRRY 294
           L  P +LH  +++PL RN+ L  G +  +  L   + S    ++  +RR+
Sbjct: 157 LYSPRILHNKEIFPLFRNRFLESGFLRLSKNLVPGVISLLFSRDDELRRW 206


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 65  FTFENMSDWEDCYYSTQETTKG 130
           F  EN  D  D +YS +E TKG
Sbjct: 197 FDLENFMDLFDNFYSDKEKTKG 218


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
 Frame = +3

Query: 135 ALKTEQAVNAARRQGIPVDTQQ--------KFG------AGTNKQHVTTKNTAKLDRETE 272
           A + E+ +  A+R GIPVD +Q        +FG      +  NK H  +KN         
Sbjct: 143 AKEQEKLIQRAKRFGIPVDDEQIKKAARAARFGIQQPLASSNNKNHNQSKNPQNRSNSRS 202

Query: 273 ELRHEKIP 296
           + R++  P
Sbjct: 203 KQRNKNAP 210


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 234 TTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKD 356
           T K+  K    T  +  E    D+GK+I  G+    ++QK+
Sbjct: 281 TAKDPVKALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKE 321


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 184 PLIRNKNLVR---GLINNTLQLKTQLNSTEKQKNYAMRRYHWIWE 309
           P +  KNL+    GL+ NTL+  T +N   K+ +  +R +  I E
Sbjct: 115 PKVVGKNLLPRADGLVENTLKRWTFINDKLKRSDTVVREFQEIEE 159


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 329 SSLH-NKFSQIQWYLLMA 279
           SS+H N F  ++WY+LMA
Sbjct: 322 SSIHSNGFGLLEWYVLMA 339


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 383 RFLTYFCCQIFLTHA 339
           RFL Y CC   LT A
Sbjct: 263 RFLNYLCCSFSLTKA 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,878
Number of Sequences: 5004
Number of extensions: 28696
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)