Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L19
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0425 + 16975143-16975284,16975682-16975765,16977414-169774... 100 5e-22
06_03_0628 - 22909954-22910421 75 2e-14
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 29 1.4
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860 29 1.8
12_02_1019 + 25359280-25359431,25359530-25359892,25360189-25360267 28 3.2
12_02_0022 - 12398938-12401015,12401119-12401182 27 5.6
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536... 26 9.9
02_05_0546 + 29889861-29890182,29891057-29892798 26 9.9
02_01_0520 + 3761051-3761107,3761420-3761822,3761960-3762129 26 9.9
>08_02_0425 +
16975143-16975284,16975682-16975765,16977414-16977496,
16977610-16977652,16978311-16978378,16978954-16979043,
16981444-16981620,16982291-16982354,16982452-16982500,
16983399-16983858
Length = 419
Score = 100 bits (239), Expect = 5e-22
Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 2/102 (1%)
Frame = +3
Query: 105 ILRKKPPKASALKTEQAVNAARRQGIPVDTQQKFGAGTNK--QHVTTKNTAKLDRETEEL 278
++RKK P A+A K E+AVNAARR G ++T +K+ AGTNK T+ NT +LD +TE L
Sbjct: 15 VVRKKAPTAAAKKDEKAVNAARRSGAEIETMKKYNAGTNKAASSGTSLNTKRLDDDTESL 74
Query: 279 RHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPHIVNDYE 404
HE++ DL K +MQ R K M+Q LA I EKP ++ +YE
Sbjct: 75 AHERVSSDLKKNLMQARLDKKMTQAQLAQMINEKPQVIQEYE 116
>06_03_0628 - 22909954-22910421
Length = 155
Score = 75.4 bits (177), Expect = 2e-14
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +3
Query: 105 ILRKKPPKASALKTEQAVNAARRQGIPVDTQQKFGAGTNKQHVTTKNTA-KLDRETEELR 281
+LR+ PKA+ LK+ +AVN A R G PV+T +K AGTNK A KLD TE
Sbjct: 18 VLRRTKPKAADLKSTRAVNQAMRTGAPVETVRKAAAGTNKAAAGAAAPARKLDESTEPAG 77
Query: 282 HEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPHIVNDYE 404
++ ++ I + R AKG SQ +LA +I E+ +V +YE
Sbjct: 78 LGRVGAEVRGAIQKARVAKGWSQAELAKRINERAQVVQEYE 118
>03_06_0311 +
33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 315 IMQGRQAKGMSQKDLATKICEKPHIVNDY 401
+M+ R +G SQK++ KICE I NDY
Sbjct: 677 MMKQRGKRGTSQKNIYIKICE-TEIANDY 704
>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
Length = 335
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 189 DTQQKFGAGTNKQHVTTKNTAKLDRETE 272
D +++F GTN+QHV + A+L R +
Sbjct: 233 DARRRFPPGTNEQHVLERAQAELSRRAD 260
>12_02_1019 + 25359280-25359431,25359530-25359892,25360189-25360267
Length = 197
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 75 KICLIGKTVTILRKKPPKASALKTEQAVNAARRQGI 182
K CL T T K PP A+A +T+Q + A G+
Sbjct: 65 KSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGL 100
>12_02_0022 - 12398938-12401015,12401119-12401182
Length = 713
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 175 KVYPLIRNKNLVRGLINNTLQLKTQLNSTEKQKNYAMRRYHWIWENLL 318
K+ ++ +K + + LI+N L TQL +++ M+ + IW + L
Sbjct: 620 KLANMLHDKEVTQDLISNRLFFATQLAKRLLERDDTMKLVYGIWVDFL 667
>12_02_0179 -
14952398-14952511,14953333-14953356,14953543-14953670,
14953765-14953891,14953930-14954013,14954245-14954397,
14954478-14954579,14955036-14955128,14955289-14955350,
14955395-14955522,14957053-14957291,14958040-14958471,
14958774-14958912,14960564-14960883
Length = 714
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +3
Query: 216 TNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICE 377
T+ Q T + ++ + ++ +EK+ + KL+MQ + S K L + +
Sbjct: 156 TDCQESTIEEGPHVEENSTDMENEKLSIRASKLVMQRKLTSLRSHKPLKANVVQ 209
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 216 TNKQHVTTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPHIVN 395
TN K + + E ++ ++ + G I QG A ++++L T++ PH++N
Sbjct: 478 TNNIATEDKPSTQETSEAHKMEVVEVSANTGIQISQGDSAG--TEENLHTEVTSVPHMIN 535
Query: 396 D 398
D
Sbjct: 536 D 536
>02_01_0520 + 3761051-3761107,3761420-3761822,3761960-3762129
Length = 209
Score = 26.2 bits (55), Expect = 9.9
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 114 KKPPKASALKTEQAVNAARRQ-GIPVDT-QQKFGAGTNKQ-HVTTKNTAKLDRETEELRH 284
+ PPK ++ + E+ VNA R++ T +++ A T +Q H T + ++ H
Sbjct: 62 RAPPKGTSSREEEEVNAGRQEHSAATGTHREEEEANTGRQEHAAAATTGTNHNQNQDCIH 121
Query: 285 EK 290
K
Sbjct: 122 RK 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,975
Number of Sequences: 37544
Number of extensions: 171188
Number of successful extensions: 397
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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