Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L19
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95619-1|CAB09112.1|  156|Caenorhabditis elegans Hypothetical pr...   110   3e-25
Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical pr...    27   5.1  
X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin prot...    27   5.1  
Z99710-7|CAJ58493.1|  645|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z99710-2|CAE54894.1|  562|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z99710-1|CAB16867.1|  674|Caenorhabditis elegans Hypothetical pr...    26   9.0  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    26   9.0  

>Z95619-1|CAB09112.1|  156|Caenorhabditis elegans Hypothetical
           protein H21P03.1 protein.
          Length = 156

 Score =  110 bits (265), Expect = 3e-25
 Identities = 49/103 (47%), Positives = 72/103 (69%)
 Frame = +3

Query: 96  TVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEE 275
           +VT++ K+ P    LK+   +NAA+R G+ + T++K  +G N+QH   KNT +LD ETEE
Sbjct: 15  SVTMITKRGPVNKTLKSAAQLNAAQRAGVDISTEKKTMSGGNRQHSANKNTLRLDEETEE 74

Query: 276 LRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPHIVNDYE 404
           L H+K+ L LGK++ Q R  KG +QKDL+T+I EKP +V +YE
Sbjct: 75  LHHQKVALSLGKVMQQARATKGWTQKDLSTQINEKPQVVGEYE 117


>Z69718-2|CAA93536.1|  139|Caenorhabditis elegans Hypothetical
           protein W06D11.3 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 216 TNKQHVTTKNTAKLDRETEELRHEKIPLDLG 308
           ++KQH+ T+N   +D E E+   EKI  + G
Sbjct: 71  SSKQHMVTENIETVDAENEQQDGEKIASNTG 101


>Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 114 KKPPKASALKTEQAVNAARR--QGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEELRHE 287
           +K  + S L++E A+N  R+  Q   +D Q +       + +  KN AK+DRE + ++HE
Sbjct: 102 RKLLEESQLESEDAMNVLRKKHQDSCLDYQDQI------EQLQKKN-AKIDRERQRVQHE 154

Query: 288 KIPL 299
            I L
Sbjct: 155 VIEL 158


>Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 114 KKPPKASALKTEQAVNAARR--QGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEELRHE 287
           +K  + S L++E A+N  R+  Q   +D Q +       + +  KN AK+DRE + ++HE
Sbjct: 102 RKLLEESQLESEDAMNVLRKKHQDSCLDYQDQI------EQLQKKN-AKIDRERQRVQHE 154

Query: 288 KIPL 299
            I L
Sbjct: 155 VIEL 158


>X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin
           protein.
          Length = 882

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 114 KKPPKASALKTEQAVNAARR--QGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEELRHE 287
           +K  + S L++E A+N  R+  Q   +D Q +       + +  KN AK+DRE + ++HE
Sbjct: 118 RKLLEESQLESEDAMNVLRKKHQDSCLDYQDQI------EQLQKKN-AKIDRERQRVQHE 170

Query: 288 KIPL 299
            I L
Sbjct: 171 VIEL 174


>Z99710-7|CAJ58493.1|  645|Caenorhabditis elegans Hypothetical
           protein F08A8.1c protein.
          Length = 645

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 156 VNAARRQGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEE 275
           + A RR+ I    Q + G GTN Q++ T  TA  D  T+E
Sbjct: 109 IRALRREIIGTYAQTEMGHGTNLQNLET--TATYDIGTQE 146


>Z99710-2|CAE54894.1|  562|Caenorhabditis elegans Hypothetical
           protein F08A8.1b protein.
          Length = 562

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 156 VNAARRQGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEE 275
           + A RR+ I    Q + G GTN Q++ T  TA  D  T+E
Sbjct: 26  IRALRREIIGTYAQTEMGHGTNLQNLET--TATYDIGTQE 63


>Z99710-1|CAB16867.1|  674|Caenorhabditis elegans Hypothetical
           protein F08A8.1a protein.
          Length = 674

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 156 VNAARRQGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETEE 275
           + A RR+ I    Q + G GTN Q++ T  TA  D  T+E
Sbjct: 138 IRALRREIIGTYAQTEMGHGTNLQNLET--TATYDIGTQE 175


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
           protein 3 protein.
          Length = 3343

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 186 VDTQQKFGAGTNKQHVTTKNTAKLDRETEEL 278
           VDT   FG   +   +  + T KLDRET +L
Sbjct: 164 VDTMSPFGIVQSDGFLFLEVTGKLDRETRDL 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,685,060
Number of Sequences: 27780
Number of extensions: 160187
Number of successful extensions: 486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)