Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L19
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.43 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.43
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +3

Query: 93  KTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKFGAGTNKQHVTTKNTAKLDRETE 272
           +T TI   K  KA  + +      ARR+GI      +  A  N    TT + A LDR  E
Sbjct: 478 RTGTISANKASKAFGIPSSTLYKIARREGI------RLAAPFNAS-PTTWSPADLDRALE 530

Query: 273 ELR 281
            +R
Sbjct: 531 AIR 533


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 343 MPLACLPCIISFPKSNGIFS 284
           M L  LPC++  PKS   F+
Sbjct: 621 MELRTLPCLLPRPKSENNFA 640


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 343 MPLACLPCIISFPKSNGIFS 284
           M L  LPC++  PKS   F+
Sbjct: 589 MELRTLPCLLPRPKSENNFA 608


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 99  VTILRKKPPKASAL 140
           +TIL KKP ++S L
Sbjct: 544 ITILEKKPSRSSTL 557


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 180 YLDGVQHLRLVQSLKLMPLVVSCV 109
           Y   + H+R   +  + P V+SC+
Sbjct: 502 YQLAINHIRWNSAFAIAPAVISCL 525


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 5/23 (21%)
 Frame = -2

Query: 359 QIFLTHALGLSSL-----HNKFS 306
           QIF ++ALGL +L     +NKF+
Sbjct: 286 QIFFSYALGLGALVALGSYNKFN 308


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 5/23 (21%)
 Frame = -2

Query: 359 QIFLTHALGLSSL-----HNKFS 306
           QIF ++ALGL +L     +NKF+
Sbjct: 339 QIFFSYALGLGALVALGSYNKFN 361


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 180 YLDGVQHLRLVQSLKLMPLVVSCV 109
           Y   + H+R   +  + P V+SC+
Sbjct: 592 YQLAINHIRWNSAFAIAPAVISCL 615


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 257 RQRNRRITP*EDTIGFGKTYYAGKTGQGHESK 352
           RQ  RR+ P E  +  G+  +A       ESK
Sbjct: 176 RQEERRLRPDEIKVEVGEDEFANGGAARDESK 207


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 175 KVYPLIRNKNLVRG 216
           ++Y ++R +NLV+G
Sbjct: 386 QIYNMVRFRNLVKG 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,777
Number of Sequences: 438
Number of extensions: 1976
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)