Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L18
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 30 0.14
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 27 1.3
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 26 1.7
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 2.2
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 2.9
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 5.1
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 25 5.1
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 25 5.1
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce... 24 6.8
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 24 6.8
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 24 6.8
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 24 6.8
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 24 6.8
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 24 6.8
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 24 9.0
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 29.9 bits (64), Expect = 0.14
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 33 RHEDFYSGHVPALANRKVDWLDGRNICREYCMDLV-SMETQEENNLIFKLIQQNDVPYIW 209
RH+DF H L N K RN+ E ++ +++ Q ++ L F+ + ++ +
Sbjct: 91 RHDDFQLHHKDLLDNIKRKAPSKRNLANENTAPVIENLKQQVDSILDFQKLLDRNLSGLA 150
Query: 210 TSGRLCDFKGCESRRDLEPKNIL 278
TS + K E +R +E +++L
Sbjct: 151 TSYQTILLKMFELKRGIESRDLL 173
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 114 REYCMDLVSMETQEENNLIFKLIQQNDV 197
+E +DL+ M+ QEEN+ I + +ND+
Sbjct: 321 KEKILDLLEMKQQEENDRISHIEYENDL 348
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 1.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +1
Query: 196 YLTYGLLGAYAISKVANHVEISNQRISLVGSGPPIAKRFQLQTRFPTAGATTHGRR 363
YLT L A ++A + I ++ +S S PI+ ++ TR A T RR
Sbjct: 134 YLTPNALQRQAKERLAQTLGIRDEEVSYEASRMPISHKWTNATRHRQALLRTQARR 189
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 2.2
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 199 LTYG-LLGAYAISKVANHVEISNQRISLVGSGPPIA 303
+T+G L+ AISKV HVE + Q+ +V +G +A
Sbjct: 340 VTHGPLISEKAISKVKQHVEDAVQKGGVVVTGGKVA 375
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 2.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 269 EYPWLVLVRQSRKDFSYKP 325
E PW +L R+S D Y P
Sbjct: 30 ELPWRILARRSGADLCYSP 48
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 5.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 135 RGPCSIHGICYVRL 94
R PC IH IC+V L
Sbjct: 36 RAPCEIHEICWVIL 49
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 5.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 215 RSPYVRYVILLDEFEDQVIFLLSLHGDEVHAV 120
R+ +Y L+EFED+++ L L D V V
Sbjct: 172 RNARAKYEESLEEFEDRMVQLKELEPDRVENV 203
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 24.6 bits (51), Expect = 5.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 141 METQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCESRRDLE 263
M T+E+ N +N++P+++ S R+ + E DLE
Sbjct: 213 MLTEEQRNYWSSYFNENNIPFLFFSARMA-AEANERGEDLE 252
>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 24.2 bits (50), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 289 GPPIAKRFQLQTRFPTAGAT 348
GPPI+ + +LQ FP A T
Sbjct: 183 GPPISYQEKLQAHFPQAKVT 202
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 6.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 96 LTNQPSC*LVREHARCRNPRAEFGTR 19
+TN S R H R +PR+++G+R
Sbjct: 104 VTNSSSHRTPRHHRRSYSPRSDYGSR 129
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 24.2 bits (50), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 191 ILLDEFEDQVIFLLSLHGDEVHAVFTAY 108
I + E+E V+ +L L+GD +A T Y
Sbjct: 82 IQVSEYEKGVLAILQLNGDPCYAYGTDY 109
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 6.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 215 RSPYVRYVILLDEFEDQVIFLLSLHGDEVHAVFTA 111
R+P+ YV+L+ IF+L L D +++F++
Sbjct: 128 RAPFYIYVLLILSKRLHSIFILRLFNDGFNSLFSS 162
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 24.2 bits (50), Expect = 6.8
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 114 REYCMDLVSMETQEENNLIFKLIQQNDVP 200
R YCM L+ E EN F N VP
Sbjct: 599 RRYCMQLIEQEGHGEN---FGFTDNNSVP 624
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.2 bits (50), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 120 IHGICYVRLTNQPSC*LVRE 61
IH +VR+TN P+C +R+
Sbjct: 282 IHSDIHVRITNLPTCFTLRD 301
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 23.8 bits (49), Expect = 9.0
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -1
Query: 170 DQVIFLLSLHGDEVHAVF 117
D+V+F+ +LHG + ++F
Sbjct: 86 DEVVFVSTLHGKTIFSIF 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,523
Number of Sequences: 5004
Number of extensions: 34302
Number of successful extensions: 90
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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