Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L18
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696... 28 2.1
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 28 2.7
06_03_1065 - 27316270-27317032,27317062-27317189 28 2.7
07_01_0571 + 4232133-4232243,4232434-4232484,4232602-4232745,423... 27 3.6
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101... 27 6.3
11_06_0757 + 26964983-26965048,26965470-26965874,26966921-269678... 27 6.3
04_01_0445 + 5812277-5813893 27 6.3
01_06_1371 - 36723967-36724290 27 6.3
12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047 26 8.4
>03_02_0952 +
12666750-12666777,12666965-12667185,12669464-12669649,
12670147-12670212,12670335-12670427,12670528-12670659,
12670794-12670895,12670993-12671070,12671148-12671219,
12672185-12672292,12672368-12672465,12672904-12672964,
12673058-12673120,12673228-12673284,12673571-12673729,
12674310-12674441,12674516-12674602,12674667-12674738,
12675899-12675985,12676052-12676427,12676727-12676788,
12676946-12677014,12677096-12677142,12677189-12677342,
12677874-12677999
Length = 911
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 18 ASCRIRHEDFYSGHVPALANRKVDWLDGRNICREYCMDLVSMETQ 152
A + R ED Y H L + + + G I + +DLVS+ETQ
Sbjct: 343 AELKKRVEDLYKAHEQEL--EEANQILGEKIAEDQFLDLVSVETQ 385
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 106 TYAVNTAWTSSPWRLKRKIT*SSNSSNRMTYLTYGLLGAYAISKVANHVEI 258
TY ++ A T S RL+ KIT +N NR+ + Y Y ++ NH+ I
Sbjct: 608 TYNIDCATTYSSERLQFKITIYNNGLNRLKHPKY----MYTANEPFNHIII 654
>06_03_1065 - 27316270-27317032,27317062-27317189
Length = 296
Score = 27.9 bits (59), Expect = 2.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 205 YGLLGAYAISKVANHVEISNQRISLVGSGPPIAKRFQLQTRFP---TAGATTHGRR 363
+ + G A +A H +S++R+++ G +A +LQ R P AGA RR
Sbjct: 17 FNVNGYSATKAMAKHEHVSSKRLTVAGPRCALALLGRLQARLPRHRRAGAARRRRR 72
>07_01_0571 +
4232133-4232243,4232434-4232484,4232602-4232745,
4232979-4233320
Length = 215
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 279 GWFWSANREKISATNQIPNGWGYNPWS 359
G+ W N ++ SA N++ GW P S
Sbjct: 16 GFIWIYNTDEASAVNKVIAGWNVEPES 42
>12_02_0025 +
12408933-12409464,12409590-12409686,12410121-12410127,
12412339-12412465,12412907-12413136
Length = 330
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 138 SMETQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCESRRDLEP 266
+++ +EEN++ K ++++ P I+ G E DLEP
Sbjct: 216 NIQQKEENDVTEKKEEKHEAPAIYEDSFQGKLNGAEINEDLEP 258
>11_06_0757 +
26964983-26965048,26965470-26965874,26966921-26967814,
26972063-26972512,26973013-26973637,26994014-26994651,
26994967-26995032
Length = 1047
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 51 SGHVPALANRKVDWLDGR 104
SG+ +A +KVDWL+GR
Sbjct: 574 SGNGRRIAEKKVDWLEGR 591
>04_01_0445 + 5812277-5813893
Length = 538
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2
Query: 295 ADQNQPRIFFGSRSLRDSQPLKSHRRPEVHM*GTSFCWMSLKIRLFSS 152
AD+ R FG L Q L+ H R H+ GT+ CW L I +SS
Sbjct: 271 ADEVARREQFG---LFSRQFLRRHGR---HLLGTTVCWFVLDIAFYSS 312
>01_06_1371 - 36723967-36724290
Length = 107
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 339 SRWESGL*LKSFRDWRTRTNQGYSLVRD 256
S WESG + + WR R +G++++ D
Sbjct: 80 SPWESGRRKEPWSPWRLRAGRGHAVLMD 107
>12_01_0956 + 9528051-9528254,9528752-9528832,9528844-9529047
Length = 162
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Frame = -3
Query: 351 GCSPSRWESG-----L*LKSFRDWRTRTNQGYS 268
G +RWE+ L L SFR WR R + G++
Sbjct: 74 GAVATRWETNGHVACLILSSFRQWRRRWDDGFT 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,882,945
Number of Sequences: 37544
Number of extensions: 244516
Number of successful extensions: 573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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