Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L17
(277 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 36 0.001
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 36 0.001
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 28 0.21
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 0.49
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 27 0.65
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 0.65
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 1.1
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 2.6
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 25 2.6
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 24 3.5
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 24 3.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 24 3.5
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 24 3.5
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 24 3.5
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 24 3.5
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 24 3.5
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 23 6.1
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 23 6.1
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 23 6.1
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 23 8.0
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 23 8.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 23 8.0
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 23 8.0
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 23 8.0
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 35.5 bits (78), Expect = 0.001
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 55 YSGYKIYPGHGKTMV*VDGKTFTFLNSKL*SCPFDEEKSP 174
+SG K+YPG G+ V D K F F+N K S F + K+P
Sbjct: 8 FSGSKVYPGAGRLFVRGDNKVFRFVNKKSESL-FLQRKNP 46
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 35.5 bits (78), Expect = 0.001
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 55 YSGYKIYPGHGKTMV*VDGKTFTFLNSKL*SCPFDEEKSP 174
+SG K+YPG G+ V D K F F+N K S F + K+P
Sbjct: 8 FSGSKVYPGAGRLFVRGDNKVFRFVNKKSESL-FLQRKNP 46
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 28.3 bits (60), Expect = 0.21
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 70 IYPGHGKTMV*VDGKTFTFLNSK 138
+YPGHG V D K F F SK
Sbjct: 13 VYPGHGIMFVRNDSKVFRFCRSK 35
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 0.49
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 85 HGQDRSCSHCKAQKTDLHFDSTKPSCRF 2
HG D+S CK Q + F S K C++
Sbjct: 502 HGTDKSVWRCKDQYSSNQFSSLKNVCQY 529
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.6 bits (56), Expect = 0.65
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 101 RWTARHSHS*TPNCEAAHLMRRN 169
RW RHS+S C A L+++N
Sbjct: 20 RWMNRHSYSHHAKCTVAQLLKQN 42
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 0.65
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 4 IGTRVSWSQNEDRSFAPYSGYKIYPGHG 87
+G R ++QN + FA + Y + PG+G
Sbjct: 177 MGQRPEFAQNVSQGFAGQAPYNVRPGYG 204
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 1.1
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = -1
Query: 271 TFVSFLVRFLAWFFFCALCEFYVCIERVHVTFTGISPHQMGSFTIWSS 128
T ++ L FL W F + + GI PH G+ W+S
Sbjct: 1115 TVIATLGSFLLWIVFMPIYAVAAPAIGFSKEYYGIIPHLYGNLKFWAS 1162
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 2.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 161 RRNPRKSNMDPFYTDVKFTKGAEEEPGQETYKK 259
RRN R P + + +G E PG++ Y++
Sbjct: 243 RRNSRSDYRRPHDDEYRRPRGDEYRPGRDEYRR 275
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 2.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 38 IGLLRLTVATRSILAMEKPWFRW 106
+GL+ +V S + +PWF W
Sbjct: 462 LGLMHESVDVSSFKSFTRPWFSW 484
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 24.2 bits (50), Expect = 3.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 88 FHGQDRSCSHCKAQKTDLHFDSTKPSCR 5
FH Q+ H ++ + F+ + PSC+
Sbjct: 13 FHRQEHQVRHIRSHTGEKPFECSYPSCK 40
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 24.2 bits (50), Expect = 3.5
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -2
Query: 153 WAASQFGVQECECLAV 106
++++ FG++ CECL V
Sbjct: 220 YSSNYFGLENCECLCV 235
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 228 SAPFVNFTSV*NGSMLLLRG 169
S+PF+NF +V G L+L G
Sbjct: 872 SSPFINFWNVSYGKYLILTG 891
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 4 IGTRVSWSQNEDRSFAPYSGYKIYPGHGKTMV 99
+GT + A Y+GYK+Y G+G ++
Sbjct: 138 LGTAAGVMITASHNPAAYNGYKVYWGNGCAII 169
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 24.2 bits (50), Expect = 3.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -1
Query: 274 GTFVSFLVRFLAWFFFCALCEFYVCI 197
G ++ +L+R L W F C F + +
Sbjct: 127 GEWMVWLIRILYWIFVAVACIFVISL 152
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 3.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 241 AWFFFCALCEFYV 203
A+F F LCEFY+
Sbjct: 320 AYFLFSQLCEFYI 332
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 24.2 bits (50), Expect = 3.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 5 SARGFRGVKMKIGLLRLTVATRSILAMEKP 94
++R F V +G+ + VATRSI+ E P
Sbjct: 922 ASRSFPFVSKTLGVNFIDVATRSIIDQEVP 951
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 80 AMEKPWFRWTARHSHS*TPNCEAAH 154
A++ PWF + H H TP + H
Sbjct: 427 ALQHPWFYTVSTHEHR-TPPSSSEH 450
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 152 GQLHNLEFKNVNVLPST*TMVFP 84
G + + FKN++ LP T T + P
Sbjct: 735 GSVEQIPFKNISSLPDTYTKLKP 757
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -2
Query: 111 AVHLNHGFSMARIDLVATVRRKRPIFILTP 22
A+HL H F++++++ R +L P
Sbjct: 79 ALHLGHAFTLSKVEFTTAFERLNGKRVLFP 108
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -1
Query: 106 PPKPWFFHGQDRSCSHCKAQKTDLHFD 26
PP+ ++ S H + + DLH D
Sbjct: 82 PPEEMLETKEEESLKHAREENDDLHLD 108
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 36 RSVFCAL-QWLQDLSWPWKN 92
R +F +L QW +D W W N
Sbjct: 184 RPIFYSLCQWGEDFVWNWGN 203
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 143 EAAHLMRRNPRKSNMDPFYTDVKFTKGAEEEPGQETYKKGHKS 271
EAA + + K+++ P + + + + EP +++ KK KS
Sbjct: 35 EAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKS 77
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 23.0 bits (47), Expect = 8.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +2
Query: 131 TPNCEAAHLMRRNPRKSNMDPFYTDVKFTKGAEEEPGQETYKK 259
TP R PR DP++TD+ A + Q Y++
Sbjct: 707 TPRTNTILANERLPRSRRDDPYWTDLLERLKAVQLSHQNNYRE 749
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 34 EDRSFAPYSGYKIYPGH 84
E+R FAP+ ++ Y GH
Sbjct: 129 EEREFAPFVLHREYTGH 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,279
Number of Sequences: 5004
Number of extensions: 23397
Number of successful extensions: 84
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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