Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L17
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 34 0.019
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 33 0.025
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 33 0.043
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 28 1.2
02_05_0499 - 29534462-29535315,29535871-29537221 27 2.8
10_08_0853 - 21076085-21076138,21076188-21076333,21076540-210766... 26 3.7
09_04_0644 + 19181335-19184424 26 3.7
05_07_0339 - 29375424-29377166,29377272-29377441,29377888-293780... 26 3.7
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 25 6.5
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 25 6.5
02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978 25 6.5
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 25 8.7
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 25 8.7
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 25 8.7
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 33.9 bits (74), Expect = 0.019
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 34 EDRSFAPYSGYKIYPGHGKTMV*VDGKTFTFLNSK 138
E +SG KIYPG G + D + F F NSK
Sbjct: 1013 EGTELCRFSGQKIYPGKGIRFIRADSQVFLFANSK 1047
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 55 YSGYKIYPGHGKTMV*VDGKTFTFLNSK 138
+SG KIYPG G + D + F F NSK
Sbjct: 10 FSGQKIYPGKGIRFIRADSQVFLFANSK 37
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 32.7 bits (71), Expect = 0.043
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 55 YSGYKIYPGHGKTMV*VDGKTFTFLNSK 138
+SG KIYPG G + D + F F NSK
Sbjct: 36 FSGAKIYPGKGIRFIRADSQVFLFSNSK 63
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 70 IYPGHGKTMV*VDGKTFTFLNSK 138
+YPGHG V D K F F SK
Sbjct: 13 VYPGHGIQFVRNDAKIFRFCRSK 35
>02_05_0499 - 29534462-29535315,29535871-29537221
Length = 734
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 60 WLQDLSWPWKNHGLGG 107
WL L W WK HG G
Sbjct: 600 WLSLLEWVWKLHGAAG 615
>10_08_0853 -
21076085-21076138,21076188-21076333,21076540-21076645,
21076739-21076816,21076923-21076979,21077070-21077130,
21077360-21077412,21077613-21077699,21077820-21077899,
21079469-21079681,21079824-21080064
Length = 391
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 268 FVSFLVRFLAWFFFCALCEFYVCIERVHVT 179
F F L +FFF ++C+F V +R+H T
Sbjct: 46 FFLFFFFLLFFFFFFSVCDFLV-FDRLHCT 74
>09_04_0644 + 19181335-19184424
Length = 1029
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 108 VHLNHGFSMARIDLVATVRRKRPIFILTP 22
+HL H FS+++++ A +R R +L P
Sbjct: 62 LHLGHAFSLSKLEFGAAYQRLRGSNVLLP 90
>05_07_0339 -
29375424-29377166,29377272-29377441,29377888-29378030,
29378363-29378478,29378576-29378814,29378909-29379110,
29379212-29379430,29379657-29379724,29379806-29379812,
29380404-29380616
Length = 1039
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 276 LELLCPFLYVSWPGSSSAPFVNFTSV 199
LE P++ + W G S+ PFV ++++
Sbjct: 482 LEWSIPYMRLPWEGPSADPFVGYSTM 507
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 93 GFSMARIDLVATVRRKRPIFILTPRNPRADS 1
G + R +LV + R +RP + PR+PR S
Sbjct: 277 GDCVLRRELVTSGRVRRPCLNMRPRSPRRSS 307
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 76 DRSCSHCKAQKT 41
DR CSHC QKT
Sbjct: 341 DRRCSHCGVQKT 352
>02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978
Length = 387
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 76 DRSCSHCKAQKT 41
DR CSHC QKT
Sbjct: 303 DRRCSHCGVQKT 314
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 232 FFCALCEFYVCIERVHVTFTGISPHQMGSFTIW 134
FF AL ++C + +T G P ++GS W
Sbjct: 1069 FFRALYHRFLCDADIGLTVDGAVPDELGSSDDW 1101
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Frame = -1
Query: 82 GQDRS-CSHCKAQKTDLHFDSTKPSCR 5
GQDR C C FD K SCR
Sbjct: 102 GQDRRFCQQCSRFHAPSEFDQEKRSCR 128
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 126 ECECLAVHLNHGFSMARIDLVATVRRKRPIFILTPRN 16
+C+CL + GF + + + A +RR + L P++
Sbjct: 100 KCDCLIAFYSSGFPLKKAEAYAALRRPFLVNELEPQH 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,301,054
Number of Sequences: 37544
Number of extensions: 163600
Number of successful extensions: 461
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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