Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L17
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    43   3e-05
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical pr...    26   3.3  
Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical pr...    26   4.4  
Z81530-6|CAB04310.1|  329|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AL033514-31|CAA22092.1|  444|Caenorhabditis elegans Hypothetical...    25   7.7  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +1

Query: 55  YSGYKIYPGHGKTMV*VDGKTFTFLNSK 138
           YSGYKI+PGHGK +V  DGK   FL+ K
Sbjct: 8   YSGYKIHPGHGKRLVRTDGKVQIFLSGK 35


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 70  IYPGHGKTMV*VDGKTFTFLNSKL*SCPFDEEKSP*K 180
           IYPGHG   V  D   F F  S+  +  F ++K+P K
Sbjct: 13  IYPGHGIQFVRNDSTVFKFCRSRC-NKLFKKKKNPRK 48


>Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical
           protein K08E7.7 protein.
          Length = 729

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 177 LRGFLLIKWAASQFGVQECECLAVHLNHGFSMARID 70
           L G   I+W   +F  + C C+  +LN  F   +++
Sbjct: 86  LLGKCTIEWDNFKFSTRICNCIFQYLNRNFVSKKVE 121


>Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical
           protein F10A3.13 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 194 TGPCYFYGDFSSSNGQLHNLEF 129
           TGP Y+Y D S+   + HN  F
Sbjct: 184 TGPHYYYTDNSTGKWKFHNPSF 205


>Z81530-6|CAB04310.1|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.8 protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 268 FVSFLVRFLAWFFFCALCEFYVCIERVHVTFTGI 167
           F+ F   F A+F+F    ++ + ++   V FTG+
Sbjct: 27  FLGFFAFFGAYFYFYGDIKYSIVVDEKIVNFTGV 60


>AL033514-31|CAA22092.1|  444|Caenorhabditis elegans Hypothetical
           protein Y75B8A.32 protein.
          Length = 444

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 182 YFYGDFSSSNGQLHNLEFKNVN 117
           YFYG F    G+L   E++ +N
Sbjct: 325 YFYGSFEDFVGKLQQEEYRKMN 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,934,983
Number of Sequences: 27780
Number of extensions: 138235
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)