Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L16
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 1.0
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 1.0
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 1.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 3.1
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 4.1
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 5.5
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 5.5
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 24 7.2
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 24 7.2
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 24 7.2
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 24 7.2
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 24 7.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 24 7.2
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 24 9.6
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 1.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 154 NSSDDTMSFSSLFSVTGAAFINPIKN 77
N S T SFS FS TG + PI+N
Sbjct: 193 NESFQTPSFSGSFSQTGTYQLTPIRN 218
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 1.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -2
Query: 262 LPMTYHPSLSSK-FNELRGTVRLTMSYLDEY--STHSFMNSSDDTMSFSSLFSVTGAAFI 92
L + Y SL+ K ++++ + + M L EY S F + D S L++ GAA
Sbjct: 424 LDVAYELSLAKKRSSKVQAGLGIIMYMLKEYERSADCFRQALQDEPSNEILWNKLGAALT 483
Query: 91 NPIKNT 74
N KNT
Sbjct: 484 NAEKNT 489
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 1.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 247 HPSLSSKFNELRGTVRLTMSYLDEYSTHSFMNSSDDTMSFSSLFSVTG-AAFINP 86
H + SS N G ++L D Y H F+ +SDDT +F A+FI P
Sbjct: 25 HVTPSSVSNNAFG-LKLRQLISDTYCPHIFIMASDDTENFMKRKGFDDFASFIRP 78
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 184 LDEYSTHSFMNSSDDTMSFSSLFSVTGAAFINPIKNT 74
LD YS+H+ S DD +F SL T A +N N+
Sbjct: 466 LDYYSSHNVTISEDDLKNF-SLVLCTHVAKVNEKTNS 501
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 172 STHSFMNSSDDTMSFSSLF 116
S +S +NSS+ T+SFS +F
Sbjct: 536 SLYSSLNSSNSTVSFSGIF 554
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 356 PFFNE*RPLYSFSPLSLTSASTKN 285
PF N +P+ + SP+++T++S N
Sbjct: 679 PFVNNTKPIVAKSPVTVTASSETN 702
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 202 RLTMSYLDEYSTHSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPK 65
R + SY DE + SSD + SS FS + + P + T PK
Sbjct: 320 RRSRSYSDEDEESVY--SSDVSTESSSQFSSRSSEYSKPSRPTAPK 363
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 175 YSTHSFMNSSDDTMSFS 125
YS S++ SDDTMS S
Sbjct: 62 YSVRSYVAGSDDTMSVS 78
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 96 KAAPVTENNDEKLIVSSELFINECVEYSSKYDIVSLT 206
K PV +++E+ I+S E ++Y+ DI+S T
Sbjct: 16 KYVPVRLSDEERKILSLLEAALEVIDYTGHVDIISYT 52
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 369 FGSHTVFQ*VKAFILLFSLII 307
FGS V + VKA L+FSL+I
Sbjct: 17 FGSRHVRRVVKALALIFSLLI 37
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 178 EYSTHSFMNSSDDTMSFSSLFSVTGAAFINPI 83
+Y T FMN M ++ F++T ++IN +
Sbjct: 190 DYGTPEFMNHLSTPMVMATSFALTTLSWINAL 221
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 24.2 bits (50), Expect = 7.2
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = +3
Query: 111 TENNDEKLIVSSELFINECVEY----SSKYDIVSLTVPLNSLNFDD 236
T N D KL SEL I + Y SS + PL SLN D
Sbjct: 511 TNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTSQPLTSLNMPD 556
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 223 NELRGTVRLTMSYLDEYSTHSFMNSSD--DTMSFSSLFSVTGAAFINPI 83
N+L GT+R TMS + + + S +S+ D F+ + + F PI
Sbjct: 113 NKLNGTLRETMSRMPSFESISLSETSNALDDSCFNDDWITIESEFSPPI 161
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 175 YSTHSFMNSSDDTMSFSSLFSVTGAAF 95
+ T F+N+ +S S LFS+ GA F
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHF 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,114
Number of Sequences: 5004
Number of extensions: 25353
Number of successful extensions: 76
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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