Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L16
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0033 - 5148513-5148806,5148928-5149271,5149391-5149472 31 0.32
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 29 1.3
03_02_0807 + 11398845-11399999 28 2.2
03_02_0723 + 10694128-10694793 28 2.2
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 28 3.0
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 3.9
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 27 3.9
10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150... 27 6.9
06_01_0881 + 6754600-6754681,6754742-6755284,6755461-6755523,675... 27 6.9
09_04_0754 - 19946423-19947061,19947315-19947429,19947509-199475... 26 9.1
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 26 9.1
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 26 9.1
>03_02_0033 - 5148513-5148806,5148928-5149271,5149391-5149472
Length = 239
Score = 31.1 bits (67), Expect = 0.32
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 256 MTYHPSLSSKFNELRGTVRLTMSYLDEYSTHSFM 155
+TYHP+L+ +F ++Y+ EY+ +S+M
Sbjct: 189 VTYHPALAGQFGVEAAAEEADLTYMSEYAYNSYM 222
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 96 KAAPVTENNDEKLIVSSELFINECVEYSSKYDIVSLTVPLNSL 224
+AAP+ E+ VSS L ++E +E S D VS P L
Sbjct: 1575 EAAPILEDRGMAPSVSSRLSLDEIIEISCDLDAVSALPPAKPL 1617
>03_02_0807 + 11398845-11399999
Length = 384
Score = 28.3 bits (60), Expect = 2.2
Identities = 21/82 (25%), Positives = 34/82 (41%)
Frame = -2
Query: 319 LPYHXXXXXXXXXXXXYSCLPMTYHPSLSSKFNELRGTVRLTMSYLDEYSTHSFMNSSDD 140
LPY+ PS++ N+ T + SY D+ +T F++ +
Sbjct: 74 LPYYDASRSSTFALPSCDSTQCKLDPSVTMCVNQTVQTCAYSYSYGDKSATIGFLDV--E 131
Query: 139 TMSFSSLFSVTGAAFINPIKNT 74
T+SF + SV G F + NT
Sbjct: 132 TVSFVAGASVPGVVFGCGLNNT 153
>03_02_0723 + 10694128-10694793
Length = 221
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 5 EGHIILCAELTRYQDAAHRLLRCRVFNRIDKSGTS 109
EG C EL + HRLLRC + +SGTS
Sbjct: 169 EGRERWCPELLVTRPRTHRLLRCSATDGNGESGTS 203
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 90 LIKAAPVTENNDEKLIVSSELFINECVEYSSKYDIVSL 203
L+ +AP N KLI +SE F N+ VE ++++L
Sbjct: 263 LLSSAPSRRMNPSKLIDNSEFFQNKLVETIQFMEVLNL 300
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 166 HSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKSVSCILVSC 35
H F+++S++ S+L S TG + N KK SC +VSC
Sbjct: 729 HPFVHNSNNFNQHSALHSPTGLKSTDTGHNARDKK--SCKIVSC 770
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 88 PIKNTTPKKSVSCILVSC 35
PIKN TPK+S S + SC
Sbjct: 335 PIKNDTPKRSASYVCNSC 352
>10_06_0136 -
11114409-11114576,11114656-11114784,11114873-11115016,
11115130-11115299,11116441-11116528,11116590-11116652,
11116678-11116799,11118506-11118671
Length = 349
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 75 VFLIGLIKAAPVTENNDEKLIVSSELFI 158
V+L L+ P+TE N KLI++S +I
Sbjct: 78 VYLWTLVYLDPITEANSFKLIIASTFYI 105
>06_01_0881 +
6754600-6754681,6754742-6755284,6755461-6755523,
6755653-6755666
Length = 233
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 90 LIKAAPVTENNDEKLIVSSELFINECVEYSSKYDI 194
L AAP+T E L SS + + CVEY++K D+
Sbjct: 113 LAVAAPITPQPTECL--SSLMALMPCVEYATKTDV 145
>09_04_0754 -
19946423-19947061,19947315-19947429,19947509-19947587,
19947863-19948007
Length = 325
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 93 IKAAPVTENNDEKLIVSSELFINECVEYSSKYDIVSLTVPLNSLNFD 233
+ A P +N DE L++ EL+ +E K V+L P+ S+ F+
Sbjct: 5 LSAVPAQKNEDESLVLFGELYRHE------KEKDVNLLEPMYSVEFE 45
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 217 LRGTVRLTMSY-LDEYSTHSFMNSSDDTMSFSSLFSVTGAAFINP 86
L+G +L M+ L Y HSF+ S + L + G AF++P
Sbjct: 576 LKGRCKLRMAGDLHHYMRHSFIESKEPVHVQHLLVNGCGGAFLHP 620
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 5 EGHIILCAELTRYQDAAHRLLRCRVFNRIDKSGTSY 112
E H+ AE R +A + C V N IDK G Y
Sbjct: 54 ESHVRQTAEYRRKVEAEMDKICCDVINIIDKKGDYY 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,628,517
Number of Sequences: 37544
Number of extensions: 136075
Number of successful extensions: 283
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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