Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L16
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41036-8|ABA61866.1| 590|Caenorhabditis elegans Dopamine recept... 27 4.6
U41036-7|ABA61865.1| 607|Caenorhabditis elegans Dopamine recept... 27 4.6
U41036-6|ABA61864.1| 605|Caenorhabditis elegans Dopamine recept... 27 4.6
AY485309-1|AAR37416.1| 607|Caenorhabditis elegans DOP-3 protein. 27 4.6
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 27 6.1
U21321-3|AAG00052.2| 655|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z92973-8|CAO82049.1| 517|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z81554-6|CAO82038.1| 517|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z68303-12|CAA92644.2| 969|Caenorhabditis elegans Hypothetical p... 26 8.1
Z68303-1|CAC42387.1| 475|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z68302-9|CAA92636.2| 969|Caenorhabditis elegans Hypothetical pr... 26 8.1
>U41036-8|ABA61866.1| 590|Caenorhabditis elegans Dopamine receptor
protein 3, isoformc protein.
Length = 590
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 163 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 59
SF SS TMS SS + T + IN N PKK+
Sbjct: 240 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 274
>U41036-7|ABA61865.1| 607|Caenorhabditis elegans Dopamine receptor
protein 3, isoformb protein.
Length = 607
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 163 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 59
SF SS TMS SS + T + IN N PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291
>U41036-6|ABA61864.1| 605|Caenorhabditis elegans Dopamine receptor
protein 3, isoforma protein.
Length = 605
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 163 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 59
SF SS TMS SS + T + IN N PKK+
Sbjct: 255 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 289
>AY485309-1|AAR37416.1| 607|Caenorhabditis elegans DOP-3 protein.
Length = 607
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 163 SFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPKKS 59
SF SS TMS SS + T + IN N PKK+
Sbjct: 257 SFQTSSFPTMSESSEDASTISPMINSFNNFLPKKT 291
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 114 ENNDEKLIVSSELFINECVEYSSKYDIVSLTVPLNSLNFDDRL 242
+N+ + L V +LF+ + ++ K IVS+ L+ FD +L
Sbjct: 45 QNSSQPLEVKIKLFLQQILDVDEKNQIVSVNAWLSYTWFDHKL 87
>U21321-3|AAG00052.2| 655|Caenorhabditis elegans Hypothetical
protein ZK177.4 protein.
Length = 655
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 84 IGLIKAAPVTENNDEKLIVSSELFINECVEY---SSKYDIVSLTV 209
+ ++K + E DEK V++ LF + C+ + K+D + L V
Sbjct: 124 LSVVKVRLLPEKCDEKTFVTAVLFSDNCIRFYNLQKKFDSLLLAV 168
>Z92973-8|CAO82049.1| 517|Caenorhabditis elegans Hypothetical
protein Y6G8.8 protein.
Length = 517
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 244 PSLSSKFN--ELRGTVRLTMSYLDEYSTHSFMNSSDDTMSFSSLFSVTGAAFINPIKNTT 71
PS + K N +L V+L M+ + E ST + + DT F V + +PI+
Sbjct: 214 PSENIKLNLMKLANQVQLVMTLIIEKSTFPTLLALRDTSKDLRYFVVKNGLYCSPIEIKV 273
Query: 70 PKKSVSC 50
++ C
Sbjct: 274 HANTIQC 280
>Z81554-6|CAO82038.1| 517|Caenorhabditis elegans Hypothetical
protein Y6G8.8 protein.
Length = 517
Score = 26.2 bits (55), Expect = 8.1
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 244 PSLSSKFN--ELRGTVRLTMSYLDEYSTHSFMNSSDDTMSFSSLFSVTGAAFINPIKNTT 71
PS + K N +L V+L M+ + E ST + + DT F V + +PI+
Sbjct: 214 PSENIKLNLMKLANQVQLVMTLIIEKSTFPTLLALRDTSKDLRYFVVKNGLYCSPIEIKV 273
Query: 70 PKKSVSC 50
++ C
Sbjct: 274 HANTIQC 280
>Z68303-12|CAA92644.2| 969|Caenorhabditis elegans Hypothetical
protein ZK792.1a protein.
Length = 969
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 156 INECVEYSSKYDIVSLTVPLNSLNFDDRLG 245
+ ECV S +++LT S FDD++G
Sbjct: 314 LKECVTLDSFNKMINLTTSRGSRMFDDKIG 343
>Z68303-1|CAC42387.1| 475|Caenorhabditis elegans Hypothetical
protein ZK792.1b protein.
Length = 475
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 156 INECVEYSSKYDIVSLTVPLNSLNFDDRLG 245
+ ECV S +++LT S FDD++G
Sbjct: 314 LKECVTLDSFNKMINLTTSRGSRMFDDKIG 343
>Z68302-9|CAA92636.2| 969|Caenorhabditis elegans Hypothetical
protein ZK792.1a protein.
Length = 969
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 156 INECVEYSSKYDIVSLTVPLNSLNFDDRLG 245
+ ECV S +++LT S FDD++G
Sbjct: 314 LKECVTLDSFNKMINLTTSRGSRMFDDKIG 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,849,957
Number of Sequences: 27780
Number of extensions: 132893
Number of successful extensions: 350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -