Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L15
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 119 1e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 119 1e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 93 9e-20
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.3
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 29 1.3
02_01_0433 + 3153802-3154064,3154149-3154713 29 1.7
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829... 29 2.2
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 5.1
02_01_0639 + 4791454-4792106,4792207-4792369,4792618-4793238 27 6.8
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 6.8
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28... 27 9.0
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569... 27 9.0
02_01_0638 + 4785232-4786155,4786418-4787038 27 9.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 119 bits (286), Expect = 1e-27
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 359 TDKGLFKILEKYRPETEAVRKERLQKAAE 445
LFK+L KYRPE +A +KERL K A+
Sbjct: 84 LATNLFKMLLKYRPEDKAAKKERLLKRAQ 112
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 119 bits (286), Expect = 1e-27
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 359 TDKGLFKILEKYRPETEAVRKERLQKAAE 445
LFK+L KYRPE +A +KERL K A+
Sbjct: 68 LATNLFKMLLKYRPEDKAAKKERLLKRAQ 96
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 93.1 bits (221), Expect = 9e-20
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +2
Query: 179 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 358
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 359 TDKGLFKILEKYRPETE 409
++L++ + E E
Sbjct: 85 LGCQKERLLKRAQAEAE 101
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 200 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDKTTD-K 367
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K + K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 368 GLFKILEK 391
+L+K
Sbjct: 412 AAKDVLQK 419
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 302 RRLKVPPPINQFTQTLDKTTDKGLFKILEKY-RPETEAVRKERLQK 436
+R P PIN +K DK L +ILEK+ + E + +++E++ +
Sbjct: 90 QRTSKPVPINSTMNKEEKWLDKALDRILEKFEQMEAKRMQEEKINQ 135
>02_01_0433 + 3153802-3154064,3154149-3154713
Length = 275
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 278 QRQKAVLQRRLKVPPPINQFTQTLDKTTDKGLFKILEKYRPETEAVRKERLQKAA 442
Q + + +R P PIN +K DK L +ILEK+ E + +R+Q+ A
Sbjct: 39 QSEMSKEDQRTSKPVPINSTMNKEEKWLDKSLDRILEKF----EQMEAKRMQEEA 89
>02_02_0450 -
10381360-10381391,10381737-10382283,10382770-10382952,
10383123-10383863
Length = 500
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 302 RRLKVPPPINQFTQTLDKTTDKGLFKILEKY-RPETEAVRKERLQK 436
+R P PIN +K DK L +ILEK+ + E + +++E++ +
Sbjct: 47 QRTSKPVPINSTMNKEEKWLDKVLDRILEKFEQMEAKRMQEEKINR 92
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 223 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 330
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>02_01_0639 + 4791454-4792106,4792207-4792369,4792618-4793238
Length = 478
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 375 SRSWRNTGQKLRQSGKSVYRKP 440
SR W T QKLR GK ++ +P
Sbjct: 106 SRPWPPTVQKLRAQGKGIFFEP 127
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 163 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 318
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
>10_01_0021 -
281130-281224,281758-281842,281916-281971,282408-282584,
282686-282805,283004-283096,283548-283668,283772-283804,
284001-284082,286600-286739
Length = 333
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 260 PKYIRIQRQKAVLQRRLKVPPPINQ---FTQTLDKTTDKGLFKILEKYRPE 403
PK + + R+K++ + P+++ F L K TDK ++LE YR E
Sbjct: 40 PKLLSLARKKSIHFVSIDETRPLSEQGPFDIILHKLTDKEWQQVLEDYREE 90
>03_02_0112 +
5689439-5689474,5689629-5689778,5690194-5690361,
5691334-5691458,5691914-5692007,5692844-5692942,
5693730-5693910,5694051-5694166,5694758-5694913,
5695226-5695354,5695554-5695718
Length = 472
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 289 LLTLDANIFRPSHETG*ISGWL 224
LLT + N RPSH + GW+
Sbjct: 102 LLTKNPNFVRPSHRLNEVQGWV 123
>02_01_0638 + 4785232-4786155,4786418-4787038
Length = 514
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 366 KVCSRSWRNTGQKLRQSGKSVYRKP 440
K SR W T +KLR GK ++ +P
Sbjct: 103 KFASRPWPPTIRKLRAQGKGIFFEP 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,237
Number of Sequences: 37544
Number of extensions: 222887
Number of successful extensions: 664
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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