Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L14
(276 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 29 0.12
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 28 0.21
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 25 1.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 1.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 2.0
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 24 3.5
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 24 4.6
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 24 4.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 4.6
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 23 6.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 6.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 23 6.1
SPBC216.06c |swi1||replication fork protection complex subunit S... 23 6.1
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 23 8.0
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 29.1 bits (62), Expect = 0.12
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 158 TTDVAGVRDEKNFPRPVRLTEPGKVRLGFIPEEWF 262
TTD+A V D+KN P P + K L E +F
Sbjct: 760 TTDIAAVVDDKNIPSPSGVIPAYKSALNVAAETYF 794
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 28.3 bits (60), Expect = 0.21
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 105 RKATRDSIFMRKFTTVNLVKYVDRRTKTSCR 13
RK T S+ + KF+T L+K + R+K S R
Sbjct: 398 RKITHPSLHLGKFSTPKLIKRMSLRSKKSLR 428
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 1.5
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = -1
Query: 267 HWNHS----SGMNPSLTLPGSVSLTGLGKFFSSRTPATS 163
HWN + S P+L LPG + +T + ++F S P S
Sbjct: 210 HWNATYATKSENYPNLVLPGPLLVTSMLEYFRSVYPQMS 248
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 1.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 158 WSFWQ*VLCTGTVWPQLN 105
WS W + GT WP ++
Sbjct: 573 WSLWNFITMLGTAWPAIS 590
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.0 bits (52), Expect = 2.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 247 NESESHFTRFSEPDWSWEVLLITHTSN 167
N E F E DWSWE + H+S+
Sbjct: 219 NNVEKANMEFDETDWSWETPFL-HSSS 244
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 3.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 79 KNAITRSFTFSCGQTVPVHSTYCQKLHHR 165
KN +T CG +P+ S + + HR
Sbjct: 123 KNNLTTVLELGCGSAIPILSCFQEFYKHR 151
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.8 bits (49), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 231 TLPGSVSLTGLGKFFSSRTPATSVVELLAISAVYGDCLAAAERKATRDSI 82
T+ S+S++ S TPA +V +ISA D E +T + +
Sbjct: 177 TILSSLSISTSNNAMSKTTPAPPLVTTKSISADQDDFYTCKEEVSTYEGL 226
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 23.8 bits (49), Expect = 4.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 186 SSRTPATSVVELLAISAVYGDCLAAAERKATRDSIFMRKFTTVNLVKYVDRRTKT 22
++RT +E L+ S V CL AE + I + ++ +Y D R +T
Sbjct: 643 ATRTVYEKAIESLSDSEVKDMCLRFAEMETKLGEIDRARLIYIHGSQYCDPRVET 697
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 23.8 bits (49), Expect = 4.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 222 GSVSLTGLGKFFSSRTPATSVVELLAISAVY 130
GS T L F+S+ + A+SVV+ L I + +
Sbjct: 3931 GSAVTTSLSTFYSASSLASSVVKPLYILSTF 3961
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 23.4 bits (48), Expect = 6.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 253 FRNESESHFTRFSEPDWSWEVLLITHTSNI 164
F +E+ +FT ++ + S E LL TH++ +
Sbjct: 618 FTDETNGYFTLLNDFNASMEELLNTHSNQL 647
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 144 ISAVYGDCLAAAERKATRDSIFMRKFTTV 58
+S VYGD A AE +DS +K TV
Sbjct: 487 MSTVYGDRSARAEDHKPKDSSAGQKMGTV 515
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 261 NHSSGMNPSLTLPGSVSLTGLGKFFSSRT 175
N+SSG S T+ + GKFFS +
Sbjct: 384 NNSSGNTDSSTIGYAAVFAAAGKFFSQHS 412
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 25 FRPTVDIFYEIYSGEFTHKNAI 90
FR VD+ Y + + +KN+I
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSI 131
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 23.0 bits (47), Expect = 8.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 3 LQEFGTRFSSYGRHILRDLQW 65
L+EF R S G +L++L W
Sbjct: 130 LREFSNRDDSIGEKMLKNLGW 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,218,896
Number of Sequences: 5004
Number of extensions: 21882
Number of successful extensions: 69
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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