Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L14
(276 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969... 34 0.019
12_01_0826 - 7629892-7629964,7630052-7630135,7630216-7630314,763... 31 0.100
01_05_0273 - 20283965-20284085,20284197-20284348,20284828-202850... 28 0.93
02_05_0801 + 31824548-31825064,31825231-31826171 27 2.1
02_01_0016 + 110796-110979,111252-111768,111847-112213 27 2.8
08_01_0931 + 9177466-9177493,9178205-9178317,9178418-9178759,917... 26 3.7
06_01_1055 - 8419587-8421065 26 5.0
09_01_0138 - 2070357-2070722 25 6.5
06_03_0604 - 22682421-22682561 25 6.5
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 25 6.5
07_03_1279 + 25415971-25416540 25 8.7
07_01_0208 + 1532691-1533209 25 8.7
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 25 8.7
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 25 8.7
01_03_0192 + 13618129-13618393,13618652-13618721,13619052-136192... 25 8.7
>11_06_0599 +
25395606-25395705,25396465-25396544,25396901-25396966,
25397076-25397123,25397226-25397293,25397404-25397476,
25397573-25397734,25398042-25398236,25398325-25398413,
25398487-25398676
Length = 356
Score = 33.9 bits (74), Expect = 0.019
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -3
Query: 274 VEALEPFFRNESESHFTRFSEPDWSWEVLL---ITHTSNICGGASGNKCCVRGLFGRS 110
V L P+F E + FS W E ++ +T IC G+ + C R ++GRS
Sbjct: 243 VPHLPPYFCYLGEWTYHHFSREVWLHETIVGNVVTRNETICDGSGEDPTCSRSVYGRS 300
>12_01_0826 -
7629892-7629964,7630052-7630135,7630216-7630314,
7630391-7630449,7630804-7630888,7630961-7631058,
7631209-7631355,7631433-7631525,7631642-7631770,
7631859-7631912,7632133-7632309,7632396-7632481,
7634234-7634324,7634433-7634531,7634618-7634694,
7634784-7634952,7639551-7639642,7639712-7639825,
7640933-7641038,7641133-7641183,7641315-7641416,
7642581-7642655,7642768-7642965,7642998-7643123
Length = 827
Score = 31.5 bits (68), Expect = 0.100
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 8 GIRHEVFVLRSTYFTRFTVVNLRIKMLSRVA-LRSAAAKQSPYTALIARSS 157
G+ +FV +T F +LR + S++A LR+ A +QS T I RS+
Sbjct: 434 GLTESIFVSHKDEYTEFEQASLRQQYQSKMAELRAEAKQQSESTGTIGRSN 484
>01_05_0273 -
20283965-20284085,20284197-20284348,20284828-20285001,
20285082-20285331,20285782-20285898,20286412-20286474,
20286568-20286740
Length = 349
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 228 LPGSVSLTGLGKFFSSRTPATSVVELLAISAVY 130
+ GSV++ GLG +SS T ++++ LL + A +
Sbjct: 80 IAGSVNIYGLGLSYSSATSSSAISNLLPVLAFF 112
>02_05_0801 + 31824548-31825064,31825231-31826171
Length = 485
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 164 DVAGVRDE--KNFPRPVRLTEPGKVRLGFIPEEWFQC 268
DV G+R+ K+FP + T P + +G++ EE +C
Sbjct: 188 DVPGLRNMRIKDFPSFIHTTNPEEYMVGYVIEETERC 224
>02_01_0016 + 110796-110979,111252-111768,111847-112213
Length = 355
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 95 VALRSAAAKQSPYTALIARSSTTDVAGV 178
V L++AA +P T +RSS+T VAG+
Sbjct: 15 VVLKAAAGSAAPPTTTRSRSSSTVVAGM 42
>08_01_0931 +
9177466-9177493,9178205-9178317,9178418-9178759,
9178935-9179139,9179322-9179344
Length = 236
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 182 DEKNFPRPVRLTEPGKVRLGFIPEEWFQC 268
DE + +P T PG++ +G W +C
Sbjct: 36 DEDDEMKPTAATSPGEIEVGPRKRRWLRC 64
>06_01_1055 - 8419587-8421065
Length = 492
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 120 LAAAERKATRDSIFMRKFTTVNLVKYVDRRTKTSCRIPAA 1
LAA A M + V LV Y RTK +CR+P A
Sbjct: 62 LAAFVPAAAATLYLMLRPRPVYLVDYACFRTKPNCRVPFA 101
>09_01_0138 - 2070357-2070722
Length = 121
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Frame = -1
Query: 225 PGSVSLTGLGKF--------FSSRTPATSVVELLAISAVYGDCLAAAERKATRD 88
PG+++L GLG F + P T E+ ++ +GD +A + T D
Sbjct: 55 PGTMALAGLGIFGVLGYLVLYHKARPGTPATEVAKVAVGHGDPVAGRDAHKTPD 108
>06_03_0604 - 22682421-22682561
Length = 46
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 173 GVRDEKNFPRPVRLTEPGKVR 235
G +EK PR R EPGK R
Sbjct: 18 GPGEEKQLPRRPRAPEPGKAR 38
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 12 FGTRFSSYGRHILR 53
+GTR+SS+GRH +
Sbjct: 342 YGTRYSSFGRHFTK 355
>07_03_1279 + 25415971-25416540
Length = 189
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 186 SSRTPATSVVELLAISAVYGDCLAAA--ERKATRDSIFMRK 70
SS PA ++ LLA S+ G+ +AAA K TR ++M +
Sbjct: 7 SSPLPALLLLVLLAASSAAGEDVAAAGGRDKLTRIRVYMHE 47
>07_01_0208 + 1532691-1533209
Length = 172
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = -3
Query: 205 WSWEVLLITHTSNICGGASGNKC 137
W E HTSN C SG C
Sbjct: 105 WVSEKQWYNHTSNSCSAPSGQSC 127
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +3
Query: 126 PRTQHLLPEAPPQMLLVCVMRRTSQDQ 206
P +H+L + PP + L +++R ++D+
Sbjct: 1190 PNNRHMLSQGPPLLALRGLIQRANRDE 1216
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 28 RPTVDIFYEIYSGEFTHKNAITRSFTF 108
R T D + SG+FT K R+F F
Sbjct: 94 RKTFDYLCSLISGDFTRKTQSFRNFRF 120
>01_03_0192 +
13618129-13618393,13618652-13618721,13619052-13619220,
13619385-13619495,13619742-13619834,13619912-13620097
Length = 297
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +1
Query: 88 ITRSFTFSCGQTVPVHSTYCQKLHHRCC 171
I R +F V CQ +HH CC
Sbjct: 240 IERRTSFDNTSITNVQRDLCQFIHHECC 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,080,863
Number of Sequences: 37544
Number of extensions: 152653
Number of successful extensions: 466
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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