Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L14
         (276 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X60221-1|CAA42782.1|  256|Homo sapiens H+-ATP synthase subunit b...    28   6.1  
BC016350-1|AAH16350.1|  256|Homo sapiens ATP synthase, H+ transp...    28   6.1  
BC005960-1|AAH05960.1|  256|Homo sapiens ATP synthase, H+ transp...    28   6.1  
BC005366-1|AAH05366.1|  256|Homo sapiens ATP synthase, H+ transp...    28   6.1  
AY871272-1|AAX11428.1|  256|Homo sapiens cell proliferation-indu...    28   6.1  
AL390195-7|CAC36042.1|  256|Homo sapiens ATP synthase, H+ transp...    28   6.1  
AK223018-1|BAD96738.1|  256|Homo sapiens ATP synthase, H+ transp...    28   6.1  
AK057026-1|BAB71347.1|  766|Homo sapiens protein ( Homo sapiens ...    28   6.1  
CR456446-1|CAG30332.1|  824|Homo sapiens dJ1170K4.2 protein.           27   8.0  
BC114928-1|AAI14929.1|  562|Homo sapiens TMPRSS13 protein protein.     27   8.0  
AY358398-1|AAQ88764.1|  802|Homo sapiens PVAE354 protein.              27   8.0  
AY190317-1|AAO38062.1|  558|Homo sapiens transmembrane protease ...    27   8.0  
AY055384-1|AAL16414.1|  811|Homo sapiens type II transmembrane s...    27   8.0  
AY055383-1|AAL16413.1|  811|Homo sapiens type II transmembrane s...    27   8.0  
AL022314-2|CAI19335.1|  788|Homo sapiens protein ( (beta-1,4-)-g...    27   8.0  
AK027798-1|BAB55376.1|  491|Homo sapiens protein ( Homo sapiens ...    27   8.0  
AJ319876-1|CAC85953.1|  802|Homo sapiens matriptase-2 protein.         27   8.0  
AB048797-1|BAB39742.2|  537|Homo sapiens mosaic serine protease ...    27   8.0  
AB048796-1|BAB39741.2|  581|Homo sapiens membrane-type mosaic se...    27   8.0  

>X60221-1|CAA42782.1|  256|Homo sapiens H+-ATP synthase subunit b
           protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 83  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 247
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 248 PEEWFQ 265
           PEE+FQ
Sbjct: 60  PEEFFQ 65


>BC016350-1|AAH16350.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 83  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 247
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 248 PEEWFQ 265
           PEE+FQ
Sbjct: 60  PEEFFQ 65


>BC005960-1|AAH05960.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 83  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 247
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 248 PEEWFQ 265
           PEE+FQ
Sbjct: 60  PEEFFQ 65


>BC005366-1|AAH05366.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 83  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 247
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 248 PEEWFQ 265
           PEE+FQ
Sbjct: 60  PEEFFQ 65


>AY871272-1|AAX11428.1|  256|Homo sapiens cell
           proliferation-inducing protein 47 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 83  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 247
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 248 PEEWFQ 265
           PEE+FQ
Sbjct: 60  PEEFFQ 65


>AL390195-7|CAC36042.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit B1
           protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 83  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 247
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 248 PEEWFQ 265
           PEE+FQ
Sbjct: 60  PEEFFQ 65


>AK223018-1|BAD96738.1|  256|Homo sapiens ATP synthase, H+
           transporting, mitochondrial F0 complex, subunit b
           isoform 1 pr protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 83  MLSRVALRSAAAKQSPYTALIARSSTTDVAGVRDEKN-----FPRPVRLTEPGKVRLGFI 247
           MLSRV L SAAA  +P     A      +   R          P P      GKVR G I
Sbjct: 1   MLSRVVL-SAAATAAPSLKNAAFLGPGVLQATRTFHTGQPHLVPVPPLPEYGGKVRYGLI 59

Query: 248 PEEWFQ 265
           PEE+FQ
Sbjct: 60  PEEFFQ 65


>AK057026-1|BAB71347.1|  766|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32464 fis, clone SKNMC1000251, highly similar to
           Homo sapiens MT-ABC transporter (MTABC) mRNA. ).
          Length = 766

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 200 LGSSSHHAHQQHLWWSFWQ*V-LCTGTVWPQLNVKLRVIAFLCV 72
           LG     A QQ  W  F + + L +G +WP+ +  L+++  +C+
Sbjct: 150 LGQQVRSAAQQSTWRDFGRKLRLLSGYLWPRGSPALQLVVLICL 193


>CR456446-1|CAG30332.1|  824|Homo sapiens dJ1170K4.2 protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGGA 152
           SE +W W+  L     +ICGGA
Sbjct: 575 SEGEWPWQASLQVRGRHICGGA 596


>BC114928-1|AAI14929.1|  562|Homo sapiens TMPRSS13 protein protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGG 155
           S+  W W+V L   T++ICGG
Sbjct: 328 SDSKWPWQVSLHFGTTHICGG 348


>AY358398-1|AAQ88764.1|  802|Homo sapiens PVAE354 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGGA 152
           SE +W W+  L     +ICGGA
Sbjct: 575 SEGEWPWQASLQVRGRHICGGA 596


>AY190317-1|AAO38062.1|  558|Homo sapiens transmembrane protease
           serine 6 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGG 155
           S+  W W+V L   T++ICGG
Sbjct: 328 SDSKWPWQVSLHFGTTHICGG 348


>AY055384-1|AAL16414.1|  811|Homo sapiens type II transmembrane
           serine protease 6 protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGGA 152
           SE +W W+  L     +ICGGA
Sbjct: 584 SEGEWPWQASLQVRGRHICGGA 605


>AY055383-1|AAL16413.1|  811|Homo sapiens type II transmembrane
           serine protease 6 protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGGA 152
           SE +W W+  L     +ICGGA
Sbjct: 584 SEGEWPWQASLQVRGRHICGGA 605


>AL022314-2|CAI19335.1|  788|Homo sapiens protein (
           (beta-1,4-)-glycoprotein  ).).
          Length = 788

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGGA 152
           SE +W W+  L     +ICGGA
Sbjct: 561 SEGEWPWQASLQVRGRHICGGA 582


>AK027798-1|BAB55376.1|  491|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14892 fis, clone PLACE1004270, weakly similar to
           TRANSMEMBRANE PROTEASE, SERINE 2 (EC 3.4.21.-). ).
          Length = 491

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGG 155
           S+  W W+V L   T++ICGG
Sbjct: 333 SDSKWPWQVSLHFGTTHICGG 353


>AJ319876-1|CAC85953.1|  802|Homo sapiens matriptase-2 protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGGA 152
           SE +W W+  L     +ICGGA
Sbjct: 575 SEGEWPWQASLQVRGRHICGGA 596


>AB048797-1|BAB39742.2|  537|Homo sapiens mosaic serine protease
           protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGG 155
           S+  W W+V L   T++ICGG
Sbjct: 303 SDSKWPWQVSLHFGTTHICGG 323


>AB048796-1|BAB39741.2|  581|Homo sapiens membrane-type mosaic
           serine protease protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 217 SEPDWSWEVLLITHTSNICGG 155
           S+  W W+V L   T++ICGG
Sbjct: 328 SDSKWPWQVSLHFGTTHICGG 348


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,815,501
Number of Sequences: 237096
Number of extensions: 872478
Number of successful extensions: 2097
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2097
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)