Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L13
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   1.1  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   1.1  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    26   1.5  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   1.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   4.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   5.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   5.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   5.9  

>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 147 SLLKQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLRAVVINGQRI-FTFDG 299
           +L K +I  D  DLL  +    PRSIN + ++P  L    I+ +   F++DG
Sbjct: 366 ALSKHIIFFDL-DLLNNISFPIPRSINAIQQLPCFLIDTGISAKEYDFSYDG 416


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 218 SWSVGTNQSKQVGIVSRYQLFEQT 147
           +W+ G   SK++G V R  +F+QT
Sbjct: 507 NWNAGLLYSKRLGPVGRAMIFQQT 530


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 117 IPVWSGEASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 245
           I +    A  SLL+ L S   P +L  V   R  SI+PL+E P
Sbjct: 286 IEIVQSNALPSLLRLLRSSYLPLILASVACIRNISIHPLNESP 328


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 257 AKFSRHFVKWVDRSWSVGTNQSKQVGIV 174
           A FS H +  V R W+  TN SK++GI+
Sbjct: 262 AYFS-HDISNVPRDWNKVTNYSKRLGII 288


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 116 HPGMVWRGVMEFAQTADIWRLSRLAYF 196
           H G  WR V++  QT DI+    LA F
Sbjct: 263 HDGEHWRVVIDSDQTGDIYLHKPLADF 289


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 204 TYRPRSINPLDEMPAKLRAVVI 269
           +Y P+ INP +E+P   R + I
Sbjct: 15  SYEPQEINPGEEIPENEREISI 36


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = +3

Query: 6   RLVAAFSSLSQYIPSQVTGYAASGPTSWTSYLFSPASIPVWSGEASWSLLK 158
           ++   F+ + +  P+  +G+ +    +WT Y+  P S    +    WS+++
Sbjct: 560 KMFKIFNFIREQYPALKSGWKSVKLRNWTEYVHFPNSGKTPTEVGVWSIVR 610


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 13  LQRSVHSRNTYRPRSPVMLLLDLHHGLVICSLLRASRYGLARRHG 147
           +  SVH  +   PR PV    D H+G         + + LA  HG
Sbjct: 343 IDSSVHCWDLRSPRFPVNSFYDWHNGATQVKWNYKNPHILASSHG 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,115
Number of Sequences: 5004
Number of extensions: 25987
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)