Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L13
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0373 - 7865708-7866310,7869547-7870443 29 0.98
09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991... 28 1.3
03_06_0180 + 32175658-32178145,32178765-32178808 28 1.7
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 27 3.0
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 27 3.0
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 27 3.0
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 27 3.0
02_03_0177 - 16017650-16019599 27 3.0
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 27 4.0
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 27 4.0
01_06_1372 + 36726129-36728240 27 4.0
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979... 26 5.2
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 26 5.2
04_04_1171 - 31455136-31455482,31455805-31458982 26 6.9
10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839 25 9.2
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 25 9.2
09_02_0233 + 6113335-6113416,6113550-6113596,6114129-6114419,611... 25 9.2
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084... 25 9.2
03_04_0062 + 16965323-16966024 25 9.2
03_02_0475 + 8760948-8760987,8761043-8761181,8761268-8761358,876... 25 9.2
03_01_0298 + 2318836-2319051,2321238-2323106 25 9.2
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 25 9.2
>03_02_0373 - 7865708-7866310,7869547-7870443
Length = 499
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 101 VLSCEHPGMVWRGVMEFAQTADIWRLSRLA 190
+L EHPG+ WR + F+ TA++ RLA
Sbjct: 118 LLGLEHPGVRWRAIRRFS-TAELLAPRRLA 146
>09_06_0123 -
20997498-20997512,20998015-20998100,20999066-20999198,
20999264-20999341,21000130-21000216,21001164-21001254,
21001338-21001488,21001567-21002296,21002404-21002820
Length = 595
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 60 GYAASGPTSWTSYLFSPASIPVWSGEASWSLLKQLISGDYPDLL--TLVRTYRPRSI-NP 230
G GP SW + S A+ W AS LK L G P +V + +P + NP
Sbjct: 96 GIMGGGPGSWPALAESAAARGSWPKSASSDSLKSLSDGSAPSASEDLIVPSVQPHPVANP 155
Query: 231 L 233
+
Sbjct: 156 I 156
>03_06_0180 + 32175658-32178145,32178765-32178808
Length = 843
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = -3
Query: 307 KCLPSNVKM-----RCPLMTTARSLAGISSSGLIDRGL*VRTKVSKSG*SPDISCLSKLH 143
KCL K+ R L+T ++G +G +D+ L + + KSG PD L L
Sbjct: 296 KCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLL 355
Query: 142 DASPDHTGMLAGE 104
A D G G+
Sbjct: 356 PALTDLNGFNQGK 368
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 72 SGPTSWTSYLFSPASI--PVWSGEASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMP 245
S SW S + P+ + W LL+ +S D PDLL V+ P + + MP
Sbjct: 345 SSRISWFMGTVSAVQVADPIRWPNSPWRLLQ--VSWDEPDLLQNVKRVSPWLVELVSNMP 402
Query: 246 A 248
A
Sbjct: 403 A 403
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 79 LHHGLVICSLLRASRYGLARR 141
+ H + +LLRA RYG ARR
Sbjct: 1 MRHNRSLAALLRAGRYGAARR 21
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 156 KQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLRAVV 266
++L++GD+ L L+++Y P +I+ L + KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 283 MRCPLMTTARSLAGISSSGLIDRGL*VRTKVSKSG*SPDISCLS 152
+R L+T + + ++SGL+DR + + ++++ G P C +
Sbjct: 385 VRLNLVTWSSLINAYANSGLVDRAIEILEEMTRDGCQPTAPCFN 428
>02_03_0177 - 16017650-16019599
Length = 649
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -3
Query: 289 VKMRCPL--MTTARSLAGISSSGLIDRGL*VRTKVSKSG*SPDISCLSKL 146
++ RCP +T A + +GL+DR + + ++ + G +PD+ S L
Sbjct: 217 IRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTL 266
>06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 2 HEAGCSVQFTLAIHTVPGHRLCCFWTYIMD*LFVLSCEHPGMVWR 136
+EAG + +LAIH G +CC +++ L + H +VW+
Sbjct: 973 YEAGAPIFGSLAIHHHGGKVICC----LVNGLVIALNSHGSVVWK 1013
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +3
Query: 93 SYLFSPASIPVWSGEASWSLLKQLISGDYP--------DLLTLVRTYRPRSINPLDEMPA 248
S L + A+ V G+A + L+SG++P + +P ++ +DE
Sbjct: 272 SSLAAAAASAVLCGDALHQIAFPLVSGEFPWTEAFNAVSIQLAALATKPSEVDAVDEAVG 331
Query: 249 KLRAVVING 275
KL++V+ NG
Sbjct: 332 KLKSVLDNG 340
>01_06_1372 + 36726129-36728240
Length = 703
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 286 KMRCP--LMTTARSLAGISSSGLIDRGL*VRTKVSKSG*SPDI 164
K CP L+T + G+ +G ID+ + T +++ G PDI
Sbjct: 608 KKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDI 650
>02_05_0339 -
28094581-28094817,28095011-28096381,28097713-28097922,
28098047-28098283,28098677-28099041,28099661-28099970
Length = 909
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 SCEHPGMVWRGVMEFAQTADIWRLSRLAYFGSYLQTTIDQPT-*RNAC 247
SC G++WRGV+ A D + + Y G + T +Q T NAC
Sbjct: 147 SCCLVGIIWRGVLYVANLGD--SRAVVGYLGRTNKITAEQITRDHNAC 192
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 120 PVWSGEASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMPA 248
P+ ++ W LL+ ++ D PDLL V+ P + + MPA
Sbjct: 342 PIRWPQSPWRLLQ--VTWDEPDLLQNVKRVSPWLVELVSSMPA 382
>04_04_1171 - 31455136-31455482,31455805-31458982
Length = 1174
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 6 RLVAAFSSLSQYIPSQVTGYAASGPTSWTSYLFS---PASIPVWSGEASWSLLKQLISGD 176
RL+ +SLS IP+ ++ S + LFS PA + SL + ++GD
Sbjct: 381 RLIVQNNSLSGQIPASISNCTQLANASMSFNLFSGPLPAGLGRLQSLMFLSLGQNSLAGD 440
Query: 177 YPD 185
PD
Sbjct: 441 IPD 443
>10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839
Length = 626
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 91 LVICSLLRASRYGLARRHGV 150
+V+ S++ + R G ARRHG+
Sbjct: 453 MVVTSVVESQRLGYARRHGL 472
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 54 VTGYAASGPTSWTSYLFSPASIPVWSGEASW 146
+TGY SW+ LF+P+ +G A W
Sbjct: 442 LTGYLLDTTHSWSISLFAPSIFFYLTGTAVW 472
>09_02_0233 +
6113335-6113416,6113550-6113596,6114129-6114419,
6114651-6114668
Length = 145
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 242 HFVKWVDRSW 213
HFVKWVD W
Sbjct: 48 HFVKWVDPEW 57
>04_04_0209 +
23607749-23607893,23607990-23608043,23608156-23608433,
23609524-23609894,23610033-23610096,23610472-23610603
Length = 347
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 183 RDSLQISAV*ANSMTPRQTIPGCSQER 103
R L+I+A S TP Q P C++ R
Sbjct: 163 RSRLRIAAAQQRSQTPEQNTPHCTEVR 189
>03_04_0062 + 16965323-16966024
Length = 233
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 57 TGYAASGPTSWTSYLFSP 110
T AA+GPT+W+S + P
Sbjct: 10 TATAAAGPTAWSSQKYRP 27
>03_02_0475 +
8760948-8760987,8761043-8761181,8761268-8761358,
8761436-8761499,8762837-8762942,8763018-8763072,
8764377-8764430,8765223-8765312,8765462-8765518
Length = 231
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 105 SPASIPVWSGEASWSLLKQLISGDYPDLLTLVRTY 209
SPA PVW G + +S + + G + L V Y
Sbjct: 40 SPAPAPVWPGLSCFSRVATSLRGGWSGALNKVEHY 74
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 129 SGEASWSLLKQLISGDYPDLLTLVRTYR-PRSINPLDEMPAKLRAVV 266
SG +S S + GD +L TL+ TY+ P ++ L L +VV
Sbjct: 622 SGLSSHSWQRATARGDSTELTTLINTYQTPSMVDMLQRSQTILPSVV 668
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KQLISGDYPDLLTLVRTYRPRSINPLDEMPAKL 254
K+L++GD+ L L++ Y P +I+ L + KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,449
Number of Sequences: 37544
Number of extensions: 184026
Number of successful extensions: 576
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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