Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L12
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   2.4  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    24   5.5  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    24   5.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    23   7.3  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    23   7.3  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    23   7.3  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    23   9.6  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 259 WLIESAPYIAYNHLRLIPHRMVAA 188
           W +E+APY  +N+  +I  ++++A
Sbjct: 116 WCLENAPYPNWNYEMMITEKLLSA 139


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 172 GPISVKPQPFDAELIVDGCRLY 237
           GP  ++P   D ELI D C +Y
Sbjct: 346 GPFLLQPAVADDELIEDYCDIY 367


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 YIYDV*AKVCFFVRGKLENYW 173
           YI++  +KV +  R KL+ YW
Sbjct: 122 YIHEYLSKVLYARRNKLDPYW 142


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 201 EWLRLHADRSSSFPVYLGQRNKLSPIHHIYRED 103
           EW R+    S    +YLG R +     ++Y ED
Sbjct: 879 EWQRMQGIESGDILLYLGSRTQRE--EYLYGED 909


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 173 PVVFQFTSDKETNFRLYIIYIEKMSSLTYLFETIVETDI 57
           P+  +F S   TN   Y++ +  M+ L  LF+   + +I
Sbjct: 471 PINLRFISTPGTNNSRYLVIVYVMNQLITLFDLYSKRNI 509


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 139 VSLSEVNWKTTGPISVKPQP--FDAELIVDGCRLYM 240
           +SLS+ +W+ T  IS +  P  F A + + G  +Y+
Sbjct: 126 LSLSKGSWEVTNTISCEKTPLLFCATVQISGNEIYI 161


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 296 SKSINILTN*VNMAHRICT--IYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLY 123
           S S+NIL      + R+    ++ L P  I+  S    F+     +F+  S+KET  +LY
Sbjct: 779 SGSLNILDFITKYSSRLDLNRVFPLLPKNISMKSYHSLFSSQFRQLFEELSNKETQSKLY 838

Query: 122 IIYIEKMS 99
              +E ++
Sbjct: 839 QKRLEDLN 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,622
Number of Sequences: 5004
Number of extensions: 21846
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)