Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L12
         (300 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     27   2.1  
12_01_0231 + 1744323-1745276,1745516-1746193                           25   8.3  

>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 231 PTTIYD*FRIEWLRLHADRSSSFPVYLGQR 142
           P  +YD   + WL  H D   SF ++L QR
Sbjct: 683 PRRVYDGRSVTWLAYHGDYDLSFLLHLLQR 712


>12_01_0231 + 1744323-1745276,1745516-1746193
          Length = 543

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 137 NFRLYIIYIEKMSSLTYLFETIVETDITFIL 45
           NF L   ++EKM SL + F    E  ITF L
Sbjct: 338 NFDLMEKHVEKMLSLGFRFNPSAEDLITFYL 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,181,507
Number of Sequences: 37544
Number of extensions: 122527
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)