Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L12
(300 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95114-2|CAB52400.1| 331|Homo sapiens apolipoprotein L, 3 protein. 27 8.2
CR456379-1|CAG30265.1| 331|Homo sapiens APOL3 protein. 27 8.2
BC050596-1|AAH50596.1| 331|Homo sapiens apolipoprotein L, 3 pro... 27 8.2
BC042918-1|AAH42918.1| 331|Homo sapiens apolipoprotein L, 3 pro... 27 8.2
AY014905-1|AAG50347.1| 331|Homo sapiens apolipoprotein L-III sp... 27 8.2
AY014904-1|AAG50346.1| 402|Homo sapiens apolipoprotein L-III sp... 27 8.2
AY014903-1|AAG50345.1| 331|Homo sapiens apolipoprotein L-III sp... 27 8.2
AY014902-1|AAG50344.1| 331|Homo sapiens apolipoprotein L-III sp... 27 8.2
AF324238-2|AAK26529.1| 331|Homo sapiens apolipoprotein L-III sp... 27 8.2
AF324238-1|AAK26528.1| 402|Homo sapiens apolipoprotein L-III sp... 27 8.2
AF305227-1|AAK20213.1| 331|Homo sapiens apolipoprotein L3 protein. 27 8.2
AF070675-1|AAC83233.1| 331|Homo sapiens TNF-inducible protein C... 27 8.2
>Z95114-2|CAB52400.1| 331|Homo sapiens apolipoprotein L, 3 protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>CR456379-1|CAG30265.1| 331|Homo sapiens APOL3 protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>BC050596-1|AAH50596.1| 331|Homo sapiens apolipoprotein L, 3
protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>BC042918-1|AAH42918.1| 331|Homo sapiens apolipoprotein L, 3
protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>AY014905-1|AAG50347.1| 331|Homo sapiens apolipoprotein L-III
splice variant alpha/a protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>AY014904-1|AAG50346.1| 402|Homo sapiens apolipoprotein L-III
splice variant alpha/d protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 168 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 225
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 226 LGAASAVTGITTSIVEHSYT 245
>AY014903-1|AAG50345.1| 331|Homo sapiens apolipoprotein L-III
splice variant alpha/c protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>AY014902-1|AAG50344.1| 331|Homo sapiens apolipoprotein L-III
splice variant alpha/b protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>AF324238-2|AAK26529.1| 331|Homo sapiens apolipoprotein L-III
splice variant alpha protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>AF324238-1|AAK26528.1| 402|Homo sapiens apolipoprotein L-III
splice variant alpha/d protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 168 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 225
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 226 LGAASAVTGITTSIVEHSYT 245
>AF305227-1|AAK20213.1| 331|Homo sapiens apolipoprotein L3 protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
>AF070675-1|AAC83233.1| 331|Homo sapiens TNF-inducible protein
CG12-1 protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -2
Query: 293 KSINILTN*VNMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYIIY 114
+ + L N + HR CTI ++ S+ +AS +L G V+ FT+ +
Sbjct: 97 EKLRALANGIEEVHRGCTISNVVSSSTGAASG--IMSLAGLVLAPFTAGTSLALTAAGVG 154
Query: 113 IEKMSSLTYLFETIVETDIT 54
+ S++T + +IVE T
Sbjct: 155 LGAASAVTGITTSIVEHSYT 174
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,643,553
Number of Sequences: 237096
Number of extensions: 722110
Number of successful extensions: 4812
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4812
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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