Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L12
         (300 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    27   3.3  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    25   7.6  

>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -2

Query: 263 NMAHRICTIYSLQPSTINSASNGCGFTLIGPVVFQFTSDKETNFRLYI 120
           N AHR  T  + Q S  N+ S  C F L G +     S  + N R Y+
Sbjct: 513 NAAHRRPTTSTPQKSIQNATSPACDFQLCGNLTLDRDSSGD-NRRFYL 559


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical protein
            T20G5.5 protein.
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 149  DKETNFRLYIIYIEKMSSLTYLFETIVETDITFI 48
            D   N R+Y + + KMSS    F  ++  D+ FI
Sbjct: 1120 DPTRNHRMYRLLVSKMSSPYIPFVPLILKDLMFI 1153


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 MVVGYIWCRFYEPCLLNLL 277
           +++G IWC   E CL+++L
Sbjct: 733 LLIGAIWCYCEEDCLIHVL 751


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,467,473
Number of Sequences: 27780
Number of extensions: 117655
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)