Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L12
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   0.61 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   2.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   5.7  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 129 AKVCFFVRGKLENYW 173
           +KVC  VR KLE  W
Sbjct: 54  SKVCIVVRRKLEENW 68


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +1

Query: 31  ICMLIRIKVMSVSTIVSNKYVKLDIFSIYMMYRRKFVSLSEVNWKTTGP 177
           + +L+  K++  +++V     K  +F+  M      V++  +NW   GP
Sbjct: 277 VFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGP 325



 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 92  TYLFETIVETDITFILI 42
           TY  +   ETDITF +I
Sbjct: 212 TYKGDFPTETDITFYII 228


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 160 WKTTGPISVKPQPF 201
           WK+ G +  KP PF
Sbjct: 29  WKSRGVVGPKPVPF 42


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 146 KETNFRLYIIYIEKMSSLTYLFETIVETDITF 51
           ++ N RL++I  +   +L  LF+    T++TF
Sbjct: 85  RKLNSRLFVIRGQPADALPKLFKEWGTTNLTF 116


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 158 FTSDKETNFRLYIIYIEKMSSLTYLFETIVETDITFILISIQIQSGPRRV 9
           FT+D   ++ + +     M+S TY+  TIV   +T + + ++  S  R +
Sbjct: 228 FTTDL-LSYNILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMI 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,400
Number of Sequences: 438
Number of extensions: 1494
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)