Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L11
         (220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    26   0.78 
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   1.0  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   1.0  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   1.0  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   1.8  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    24   3.1  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    24   3.1  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    23   5.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   7.2  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    22   9.6  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    22   9.6  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    22   9.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.6  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    22   9.6  

>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 184 WLTTSNRKYASGYELVSYEVRMWVLVHSWDPG 89
           WLT  + +YA    L+   V +W   HSW  G
Sbjct: 412 WLTEDDSQYAQASGLMDIFVYLW--RHSWSNG 441


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 98  GPGEYSSLRHFHGQAFTKIMRHSKTI 21
           GPGE  S  +++G AFT      KT+
Sbjct: 485 GPGEPGSKENYYGNAFTTERTVPKTV 510


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 109 LEPTCAPRSSPIRTPKHTCDCWWL 180
           +EP CA  + P++TP      W+L
Sbjct: 252 MEPDCALPADPLKTPMSIVPEWYL 275


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 99  QLWTRTH-MRTS*LTNSYPEAYLRLLVVNQGTYRVNRY 209
           Q+W  ++ +RT  L ++Y +    L++VN+G    N Y
Sbjct: 20  QVWRNSNAIRTIDLRSTYTKTLTSLIIVNEGDEPQNTY 57


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/60 (20%), Positives = 26/60 (43%)
 Frame = -3

Query: 197 SVSSLVNHQQSQVCFGVRIGELRGAHVGSSPQLGPGEYSSLRHFHGQAFTKIMRHSKTIT 18
           +V  +  H+  ++ +   + +    H+G  P   P EY   R   G+    + + S+ I+
Sbjct: 727 TVGEIYQHENCRIAY---VAQAAFTHLGHHPDKTPSEYIQWRFQSGEDLEAMDKASRVIS 783


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 74  RHFHGQAFTKIMRHS 30
           RHFHG++F     HS
Sbjct: 257 RHFHGRSFAHAEHHS 271


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 184 WLTTSNRKYASGY--ELVSYEVRMWV 113
           W TT  RK  SGY  E+V+Y   M++
Sbjct: 600 WTTTQVRKDVSGYLQEMVTYLQTMYL 625



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 81  ITSAFSRSSFHENNETQQDYNAPAS 7
           + S+F RSSF  +   QQ++ AP S
Sbjct: 279 LLSSF-RSSFERDRRRQQEFLAPKS 302


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 166 RKYASGYELVSYEVRMW 116
           + Y   Y+L S+EVR W
Sbjct: 258 KNYPEYYQLSSFEVRYW 274


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 160  YASGYELVSYEVRMWVLVHSWDPGNTHHFGIF 65
            +   + L S   R W  +  WD GN H + IF
Sbjct: 2206 FLQNFWLSSLNGRSWSYL--WDIGNIHQWQIF 2235


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 166 RKYASGYELVSYEVRMWVLVHSW 98
           RKY SG++LVS E     L   W
Sbjct: 282 RKYWSGHKLVSSEQNTSFLQKYW 304


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 206 SIYSVSSLVNHQQSQVCFGVRIG 138
           S  +  SLVN+Q  QV FGV  G
Sbjct: 131 SAVACPSLVNNQVYQVFFGVGNG 153


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 65  ENAEVMSIPRVP 100
           ENAEV+ +PR P
Sbjct: 42  ENAEVIQVPRSP 53


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 78  TSAFSRSSFHENNETQQDYNAPA 10
           T   S S   ENN TQQ   +P+
Sbjct: 834 TGLSSHSKSAENNSTQQSTTSPS 856


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 51  HENNETQQDYNAP 13
           HENN  QQ+ N P
Sbjct: 99  HENNPGQQEINEP 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,175
Number of Sequences: 5004
Number of extensions: 17096
Number of successful extensions: 42
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)