Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_L11
(220 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178... 27 1.6
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 27 2.1
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 27 2.1
01_06_0673 + 31089846-31090132,31090258-31090453 27 2.7
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 26 3.6
06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626... 26 4.7
06_01_0254 + 1898586-1899617 26 4.7
11_01_0404 + 3071412-3071464,3073572-3074970 25 6.3
08_02_1615 + 28257275-28258428,28258523-28259144 25 6.3
05_02_0160 - 7194699-7195019,7195207-7195368,7195806-7195953,719... 25 6.3
03_05_1022 - 29756127-29756198,29756335-29756421,29756783-297569... 25 6.3
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963... 25 8.3
01_01_0627 + 4725891-4725977,4727389-4727584,4727836-4727934,472... 25 8.3
>03_03_0277 +
16116017-16117424,16117461-16117660,16117739-16117816,
16118381-16118533,16118969-16119280,16119390-16119563,
16120411-16120498,16120598-16120611
Length = 808
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = -1
Query: 211 GYRFTL*VPW-----LTTSNRKYASGYELVSYEVRMWVLVHSWDPGNTHHFG 71
G R TL PW LT S K + ++ S+ + MW ++ DP + H+G
Sbjct: 752 GMRGTL--PWMAPELLTMSGTKVSEKIDVYSFGIVMWEILTGEDPYDGMHYG 801
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 4 ARGWSVIVLLCLIIFVKA 57
+RG++++V+LC+ +FV A
Sbjct: 257 SRGYAIVVVLCICVFVSA 274
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 4 ARGWSVIVLLCLIIFVKA 57
+RG++++V+LC+ +FV A
Sbjct: 383 SRGYAIVVVLCICVFVSA 400
>01_06_0673 + 31089846-31090132,31090258-31090453
Length = 160
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 166 RKYASGYELVSYEVRMWVLVHSW 98
R+ +SG L+ Y R+W L+ SW
Sbjct: 86 RRTSSGCPLLRYTKRVWTLLASW 108
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 139 PIRTPKHTCDCW 174
P + PK TCDCW
Sbjct: 602 PEKRPKMTCDCW 613
>06_03_1328 +
29361248-29361502,29361903-29362453,29362585-29362671,
29362910-29362966,29363069-29363307,29364190-29364308,
29364397-29364483,29365511-29365567
Length = 483
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 154 SGYELVSYEVRMWVLVHSWDPGN 86
SG LV + + WV+VH +D GN
Sbjct: 187 SGATLVIHILLCWVMVHCFDLGN 209
>06_01_0254 + 1898586-1899617
Length = 343
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 94 GPNCGLEPTCAPRSSPIRTPKHTCDCWWLTRELTE 198
G GL P C +SP H CD R+L E
Sbjct: 289 GGETGLRPNCVYWTSPYDKCLHVCDIGANARKLRE 323
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 194 VSSLVNHQQSQVCFGVRIGELRGAHVGSSPQLGPGEYSSLRHFHG 60
VS L + C G R GE+ G++ + GP Y SL HG
Sbjct: 29 VSILYGTNKKLKCLGDRFGEMEGSNPPGNMTQGP-SYGSL-DLHG 71
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 95 VPTVD*NPHAHLVAHQFVPRS 157
+P+ D PH+HL+ H P+S
Sbjct: 27 LPSADQPPHSHLLHHHHSPQS 47
>05_02_0160 -
7194699-7195019,7195207-7195368,7195806-7195953,
7196286-7196362,7196717-7196787,7196891-7196977,
7197662-7198201,7198430-7198439
Length = 471
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 69 FSRSSFHENNETQQDYNAPAS 7
F + +F NN+T Y+AP S
Sbjct: 411 FRKMAFTNNNDTSSQYSAPTS 431
>03_05_1022 -
29756127-29756198,29756335-29756421,29756783-29756968,
29757088-29757188,29757379-29757484,29757564-29757638,
29757772-29757903,29771476-29771655,29772032-29772234,
29773296-29773602
Length = 482
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 148 YELVSYEVRMWVLVHSWDPGNTHH 77
Y+LV EV + ++V W+ NT H
Sbjct: 375 YKLVEKEVDLILVVGGWNSSNTSH 398
>01_01_1197 -
9630506-9630681,9630774-9630805,9630894-9630988,
9631569-9631642,9631732-9631843,9631967-9632030,
9632210-9632275,9632396-9632526,9632884-9633021,
9633115-9633227,9633306-9633471,9633588-9633701,
9633791-9633853,9633953-9634060,9634143-9634259,
9634343-9634505,9634646-9634743,9634852-9634949,
9635054-9635190,9635309-9635530,9635625-9635830,
9636758-9636845,9638085-9638668
Length = 1054
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -3
Query: 152 GVRIGELRGAHVGSSPQLGPG----EYSSLRHFHGQAFTKIMRHSKTIT 18
G +GE H+ P L PG EY S +H QA K + T T
Sbjct: 104 GTTLGETNCCHLQVGPDLPPGPTVSEYVSPPGYHRQAGKKADCSASTAT 152
>01_01_0627 +
4725891-4725977,4727389-4727584,4727836-4727934,
4728392-4728443,4728662-4728798,4728880-4728980,
4729072-4729130,4729285-4729341,4729476-4729521,
4729650-4729729,4729835-4729925
Length = 334
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 91 PGPNCGLE--PTCAPRSSPIRTPKHTCDCW 174
P +C +E PTC S+P + P TC +
Sbjct: 285 PSHDCVVECLPTCKSESNPPKFPPITCSAY 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,628,947
Number of Sequences: 37544
Number of extensions: 119983
Number of successful extensions: 333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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