Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_L11
         (220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    27   2.4  
Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    25   7.3  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    25   7.3  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     25   7.3  
Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 203 IYSVSSLVNHQQSQVCFGVRIGELRGAHV 117
           I+S  +++  +  Q+CF  R+G++R  H+
Sbjct: 225 IFSDKAVICLRDGQLCFLCRVGDMRNTHL 253


>Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical
           protein C51E3.8 protein.
          Length = 272

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 106 GLEPTCAPRSSPIRTPKHTCDCWWLTRELTE 198
           G   +C P + P   P    +CW+ TRE+ E
Sbjct: 46  GPPKSCTPPTDPNNLPASKLECWF-TREMFE 75


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 172 SNRKYASGYELVSYEVRMWVLVHSWD 95
           + RK  + Y ++   +R W ++ +WD
Sbjct: 810 ARRKQLNSYIILQRNIRSWCVLRTWD 835


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 172 SNRKYASGYELVSYEVRMWVLVHSWD 95
           + RK  + Y ++   +R W ++ +WD
Sbjct: 810 ARRKQLNSYIILQRNIRSWCVLRTWD 835


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 172 SNRKYASGYELVSYEVRMWVLVHSWD 95
           + RK  + Y ++   +R W ++ +WD
Sbjct: 810 ARRKQLNSYIILQRNIRSWCVLRTWD 835


>Z81056-3|CAB02910.1|  718|Caenorhabditis elegans Hypothetical
           protein F09F3.5 protein.
          Length = 718

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 109 LEPTCAPRSSPIRTPKHTCDCWWLTREL 192
           + P CAP + P   P     C  LTR L
Sbjct: 268 VSPNCAPITIPRNDPYFNTPCMRLTRAL 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,518,602
Number of Sequences: 27780
Number of extensions: 100666
Number of successful extensions: 261
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)